Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score =  246 bits (629), Expect = 7e-70
 Identities = 155/344 (45%), Positives = 199/344 (57%), Gaps = 31/344 (9%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           + E+L KVLA+AG GSRR LE  I  G + VNG VA  G  +   + +  +DG      A
Sbjct: 26  LEERLHKVLAQAGLGSRRALEQRIADGLIKVNGAVAQTGMSVRSGDKI-ELDGRSFVASA 84

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
             E   RVL Y KPEGE+ TR DPEGR TVF+ LP ++GSRWI++GRLD NT+GLLL TT
Sbjct: 85  LTES-SRVLVYNKPEGEVTTREDPEGRPTVFESLPALKGSRWIAIGRLDINTTGLLLLTT 143

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKV-----RNLVRGVQLEDGMARFEDVMYAG 175
           DGELAN +MHPS +VEREY+VRV     EEKV       L RGV LEDG A+F+++   G
Sbjct: 144 DGELANAMMHPSYEVEREYVVRVRAPEGEEKVPDSMIERLSRGVLLEDGGAKFDEIERIG 203

Query: 176 GEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQ 235
           G   +  F VV+ EGRNREVRRLWESQG  VSRLKR RYG + L ++L RG  +EL  ++
Sbjct: 204 GTDSHDWFRVVVKEGRNREVRRLWESQGCQVSRLKRTRYGKVSLPRELLRGQSVELAQEK 263

Query: 236 VNYLRELVELRPEKETVLNMAPDAATRKRERTRSQKIR------------------RAVR 277
           V+ LR  ++L     + L + P    R+  ++     R                  R +R
Sbjct: 264 VDALRAELKLEEGAPSALTLQPVIGQRRAAKSTVHVSRDGRSNAYVNGQTSGADEGRELR 323

Query: 278 RHEERISATPGRSGKAPARRKPGGESS--TRNKVANQQQSSRKP 319
           R +       GR G    R KPGG     T +  A  +QS ++P
Sbjct: 324 RFDNLREDRGGRGG----RGKPGGFKGGLTVSGEAAAKQSQQRP 363