Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           M+ +L K +A  G  SRRE + LI   RV+VNG +A  G  + +D+ V+ +DG  + V+ 
Sbjct: 38  MTTRLNKHIAETGFCSRREADRLIGERRVTVNGVIAGTGAVVGEDDTVL-VDGQPLRVRE 96

Query: 61  QEEVICR---VLAYYKPEGELCTRHDPEGRRTVFDRLPKIRG--SRWISVGRLDANTSGL 115
            ++   R    +A  KP G   T        +V   + +  G   R   +GRLD ++ GL
Sbjct: 97  AKKPGTRRHVYIALNKPVGITSTTES-----SVKGNIVEFVGHEQRIFPIGRLDKDSEGL 151

Query: 116 LLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAG 175
           +L T++G + N ++    + ++EYLV V   VT+E +R + RGV+L D     E  +   
Sbjct: 152 ILMTSNGNIVNEILRAENRHQKEYLVAVNKPVTDEFLRGMARGVRLHD-----ETTLPCR 206

Query: 176 GEGI-NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
              I    F +V+ +G NR++R +  + G  V++L+RVR  +I L    P G W  L
Sbjct: 207 TARIAKFGFRIVLEQGLNRQIRLMAAAFGFRVTQLRRVRIDNIKLAALKP-GQWRNL 262