Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ribosomal large subunit pseudouridine synthase B from Pseudomonas syringae pv. syringae B728a

 Score =  298 bits (763), Expect = 2e-85
 Identities = 162/324 (50%), Positives = 214/324 (66%), Gaps = 6/324 (1%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           EKLQKVLAR G GSRR++EA I  GR+ VNGK A LG+R++  +A+  +DG V+  +   
Sbjct: 17  EKLQKVLARIGVGSRRDVEAWITQGRIKVNGKDATLGQRVDLHDAI-SVDGRVIKREEAA 75

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           E + RV+ Y KP+GE+CTR DPEGR TVFDRLP+ +  RWI++GRLD NT+GLL+FTTDG
Sbjct: 76  ETVRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLMFTTDG 135

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYA-GGEGINH 181
           ELANRLMHPS +++REY VRV G+V ++ +  L  GV LEDG ARF D+  A GGEG NH
Sbjct: 136 ELANRLMHPSFEMDREYAVRVRGEVDDDMLLRLKNGVILEDGPARFTDIQQAPGGEGFNH 195

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            ++ V+ EGRNREVRRLWESQG  VSRLKRVRYG +FL+  LP G W E+   +V+ L  
Sbjct: 196 WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRYGPVFLNSDLPMGRWREMSQYEVDILAA 255

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKPGG 301
            V L+P  +  +N        + +R  S+ + +  R    R +A    +G   A R+P  
Sbjct: 256 EVGLQPVAQPQMNAKTKDKMERLQRQSSRPLGKGERVRTLRPAAGAPATGGERAPRQPQI 315

Query: 302 ESSTRNKV----ANQQQSSRKPRG 321
             S R++     + Q+ S RK  G
Sbjct: 316 TGSERDRPRGGDSTQRPSPRKDSG 339