Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., pseudouridine synthase from Synechocystis sp000284455 PCC 6803

 Score =  136 bits (342), Expect = 6e-37
 Identities = 96/252 (38%), Positives = 133/252 (52%), Gaps = 9/252 (3%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           M+E++QK+L++ G  SRR  E +I AGRVSVNGKVA LG++ +     + +DG    +KA
Sbjct: 1   MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDFLSVDGK--QIKA 58

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPK--IRGSRWISVGRLDANTSGLLLF 118
                   L   KP   L T  DP GR+TV D LP+   RG     VGRLD N++G LL 
Sbjct: 59  DNRPRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLL 118

Query: 119 TTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEG 178
           T DGEL  RL HP   + + Y V + G+ ++E +     G+ L DG       +    E 
Sbjct: 119 TNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMML-DGKKTLPATLEVISEN 177

Query: 179 INHT-FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFL---DKKLPRGGWMELDLK 234
            +     V + EGRNR++RRL E  G TV +L R   G + L    K L  G +  L   
Sbjct: 178 KDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPA 237

Query: 235 QVNYLRELVELR 246
           ++  L++ V LR
Sbjct: 238 EIRLLKKQVNLR 249