Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., ribosomal large subunit pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score =  134 bits (336), Expect = 3e-36
 Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 5/245 (2%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           M+E+LQK+L++ G  SRR+ E  I+ GRV++NG+VA +G++ +     + +DG  +  K 
Sbjct: 1   MAERLQKILSQLGVASRRQAEQWIQQGRVTINGRVAEIGQQADLKRDRIHLDGKRLRPKH 60

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRL-PKIRGSRWISVGRLDANTSGLLLFT 119
           + E   R L  +KP G + T  DP+ RRTV D + P+ R      VGRLD ++SGLLL  
Sbjct: 61  RPE--ARYLLLHKPVGVVSTCRDPQRRRTVIDLVDPEFRPGLH-PVGRLDTDSSGLLLLC 117

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
            DGEL  ++ HP   +E+ Y V V G      + +   GV L+D       V        
Sbjct: 118 NDGELTYQISHPRFHIEKTYRVWVEGHPPASVLEHWRSGVWLDDYQTLPAGVRILHDRAE 177

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           +    V+++EGRNR++RR+ E  G  V RL RV  G + L    P G +  L   +V  L
Sbjct: 178 STLLEVILHEGRNRQIRRVAEQLGHPVLRLTRVAIGPLRLGSLQP-GEYRSLTAAEVYRL 236

Query: 240 RELVE 244
           R+L +
Sbjct: 237 RQLAQ 241