Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 573 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  134 bits (338), Expect = 4e-36
 Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 40/336 (11%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKV-------AVLGERLEDDNAVVRIDGHV 55
           +++ K+L+RAG  SRR++E +I  GRVS+NG V       A L +R+E       +DGH 
Sbjct: 47  QRISKILSRAGVASRRDVERMIMEGRVSLNGVVLDTPVVNATLADRIE-------VDGH- 98

Query: 56  VSVKAQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGL 115
             ++  E    R+  Y+KP G + T  DPEGR TVF+ LP+    R +SVGRLD NT GL
Sbjct: 99  -PIRGIERT--RLWLYHKPGGLVTTNADPEGRPTVFENLPE-ELPRVLSVGRLDINTEGL 154

Query: 116 LLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAG 175
           LL T DG LA  L  PS    R Y VR  G++ +E +  L  G+ ++  +    +     
Sbjct: 155 LLLTNDGGLARVLELPSTGWLRRYRVRAHGEIDQEALDRLKEGIAVDGVLYGAIEATLDR 214

Query: 176 GEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL---D 232
            +G N    + + EG+NRE++ +  + G  V+RL R+ YG   L  +LP G   E+    
Sbjct: 215 VQGSNVWITMGLREGKNREIKNVLGALGLDVNRLIRISYGPFQLG-ELPIGQVQEIRGRT 273

Query: 233 LKQVNYLRELVELRPEKET-VLNMAPDAAT--------------RKRERTRSQKIRRAVR 277
           L++    R + + +   +  + N  P AA                KRE+   ++ R   R
Sbjct: 274 LREQLGPRLIADSKANFDAPIYNDQPAAAEPEAEPADHGKAEWGSKREKAEDKRERALAR 333

Query: 278 RHEERISATPGRSGKAPAR--RKPGGESSTRNKVAN 311
               R    P   G++  +   +P      RN+ +N
Sbjct: 334 LDTRRDDGRPSERGRSRGKPEERPARPPVRRNRSSN 369