Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score =  118 bits (296), Expect = 2e-31
 Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 7/237 (2%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNG-KVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           L + L++ G+ SR + E LI  GRVSV G K+  L   ++ +   + +DG V++ +A+  
Sbjct: 85  LARALSKLGYCSRTQAEKLIAEGRVSVAGRKITDLSHWVDIEADRIAVDGTVIAAQARVY 144

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
           ++       KP G + TR DPEGR TVF  L  +       VGRLD  + GLLLFT D  
Sbjct: 145 LMLN-----KPRGLVTTRDDPEGRPTVFSCLDNVDVPSLSPVGRLDKASEGLLLFTNDTV 199

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHTF 183
           LA RL+ P   + + Y V+V G   E     +V GV     + R   V    G   N   
Sbjct: 200 LAQRLLDPETHLGKVYHVQVRGIFGEAMAARMVEGVTEGGELLRALRVERLKGGDRNSWI 259

Query: 184 YVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
            + ++EGRNR++RR+ +  G    RL RV  G+I L   LP+G    L   +  YLR
Sbjct: 260 EIELDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRLG-DLPKGASRPLTEAEALYLR 315