Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 95.5 bits (236), Expect = 1e-24
 Identities = 79/253 (31%), Positives = 119/253 (47%), Gaps = 15/253 (5%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L K LA AG  SRR    LI  GRV ++G+ A   +R+ D N V  +DG  +   AQ +
Sbjct: 11  RLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRVFDSNRVT-VDGAPLC-PAQAK 68

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
                  Y+KP G  C R   E   ++   LP     R    GRLD ++ GLLL T DGE
Sbjct: 69  AY---FLYHKPVGIDC-RLRAEDPHSLIHCLPG--DLRLFPAGRLDKDSRGLLLLTNDGE 122

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMAR------FEDVMYAGGE 177
           L  RLMHP    ++ YL+ +      + +  +  G    +G  R        D  YA  +
Sbjct: 123 LTQRLMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEGPTRPCVVEAAIDCGYATED 182

Query: 178 GINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVN 237
           G      + + EG+ R++RRLW ++G  V  L R     + +  KL +G    L   ++ 
Sbjct: 183 GNPRKLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNIG-KLEQGEIRSLTASELR 241

Query: 238 YLRELVELRPEKE 250
            L+  ++L  E++
Sbjct: 242 QLKRTLDLPNEQD 254