Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score =  357 bits (915), Expect = e-103
 Identities = 182/298 (61%), Positives = 229/298 (76%), Gaps = 4/298 (1%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           MSEKLQKVLARAGHGSRRE+EA I AGRVS+NG++A LG+R++ D A VR+DG +VS+K+
Sbjct: 1   MSEKLQKVLARAGHGSRREMEAWIAAGRVSINGEIANLGDRVDAD-AKVRLDGRLVSIKS 59

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
            +++ICRVLAY+KPEGE+C+R DPEGR TVFDRLPK+R +RW++VGRLD NTSGLLLFT+
Sbjct: 60  ADDIICRVLAYHKPEGEICSRKDPEGRPTVFDRLPKLRDARWVAVGRLDINTSGLLLFTS 119

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DGELANRLMHPS +V+REY VR FG+V +  ++ L  GV LEDG A+F+ V  AGGEG+N
Sbjct: 120 DGELANRLMHPSNEVDREYAVRTFGEVNDFTIQKLRTGVMLEDGPAQFDYVKAAGGEGVN 179

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             ++V + EGRNREVRRLWESQ   VSRL RVRYG I L K LPRGGW+EL L+QVNYLR
Sbjct: 180 QWWHVGLREGRNREVRRLWESQEVQVSRLIRVRYGMIELPKTLPRGGWIELPLEQVNYLR 239

Query: 241 ELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRK 298
           +L  + PE  +++     +  R   + RS KIRRAVR+   ++ A  G     P R +
Sbjct: 240 QLAGMDPETRSMIGTDKHSVAR-ASQVRSAKIRRAVRK--SKVGAATGSKRPKPTRTR 294