Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Pseudouridine synthase, Rsu (NCBI) from Rhodospirillum rubrum S1H

 Score =  140 bits (352), Expect = 5e-38
 Identities = 93/214 (43%), Positives = 118/214 (55%), Gaps = 5/214 (2%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           SE++ KV+ARAG  SRR+ E LI  GRV++NG+       L   +  V +DG  +     
Sbjct: 5   SERIAKVIARAGICSRRDAEKLIVEGRVTLNGRKVETPATLVAASDTVTVDGKPLPALEP 64

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
                R+  Y KP G + +  D +GR TVF+RLP     R ISVGRLD N+ GLLL T D
Sbjct: 65  ----ARLWRYNKPIGLVTSHRDEQGRPTVFERLPATL-PRVISVGRLDLNSEGLLLLTND 119

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           GELA RL HPS+   R Y VRV G     K+  L +GV +E        V     +G N 
Sbjct: 120 GELARRLEHPSQGWLRRYRVRVHGAPDPVKLAALEKGVTVEGVAYGSIRVALERQQGANA 179

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYG 215
              V + EG+NRE+RR+ E  G  VSRL RV YG
Sbjct: 180 WLSVSLREGKNREIRRVMEHLGLPVSRLIRVAYG 213