Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., 16S rRNA pseudouridine(516) synthase RsuA from Rahnella sp. WP5

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 23/241 (9%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L K L++    SR  +   +R  RV+V+G++   G         V  DG+V+       
Sbjct: 2   RLDKFLSQQLGVSRALVLRELRNKRVTVDGEIVKTGSMKISPEQRVEFDGNVLDQITGP- 60

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
              R     KP+G +C+  DP+   TV   L +    +  + GRLD +T+GL+L T DG+
Sbjct: 61  ---RYFMLNKPQGYVCSTDDPD-HPTVLYFLEEPVAYKLHAAGRLDIDTTGLVLMTDDGQ 116

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQL--EDGMA------RFEDVMYAG 175
            ++R+  P    E+ YLV +   + ++       GVQL  ED +       + ED +   
Sbjct: 117 WSHRITSPRHHCEKTYLVTLEHPLADDTAAQFEAGVQLHNEDSLTKPAQLEKIEDCLVR- 175

Query: 176 GEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQ 235
                    + ++EGR  +V+R++ + G  V  L R R G+I +D+ L  G +  L  ++
Sbjct: 176 ---------LTLSEGRYHQVKRMFAAVGNRVVALHRERIGEIVMDEDLEPGQYRPLTEQE 226

Query: 236 V 236
           V
Sbjct: 227 V 227