Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., putative ribosomal large subunit pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score =  130 bits (327), Expect = 6e-35
 Identities = 112/325 (34%), Positives = 156/325 (48%), Gaps = 35/325 (10%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVA---VLGERLEDDNAVVRIDGHVVSVK 59
           +++ KVL+RAG  SRRE E +I  GRV+VNGKV     L   L  D  VV  DG+ +   
Sbjct: 46  DRIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVVLGKDRIVV--DGNPM--- 100

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
            Q+    R+  Y+KP G + T +D   RRT+FD LP+    R ++VGRLD N+ GLLL T
Sbjct: 101 -QDPEPPRLWMYHKPSGLVTTTNDELDRRTIFDALPEDM-PRVMTVGRLDLNSEGLLLLT 158

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
            DG +  +L  PS    R Y VR+ G   +     L +G+ +E    +   V     +G 
Sbjct: 159 NDGGIKRQLELPSTGWLRRYRVRINGRPKDTDFEPLRQGLVIEGERFQPMTVALDRQQGA 218

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N    + + EG+NRE+RR  E  G TV+RL R+ YG   L    P               
Sbjct: 219 NAWLTIGLREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLGNLKP--------------- 263

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRH--EERISATPGRSGKAPARR 297
            E+ ELRP    V +    AA    E    +K +R VR+     +    PG      +  
Sbjct: 264 GEVEELRP--RVVRDQLGLAAPETEE---DEKPKRPVRQRPGAGKPGTKPGAKPDFKSGG 318

Query: 298 KPGGESSTR---NKVANQQQSSRKP 319
           KPGG+ S +       +  +SS KP
Sbjct: 319 KPGGKPSGKPSGRSFGSADRSSEKP 343