Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 77/244 (31%), Positives = 114/244 (46%), Gaps = 20/244 (8%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLE--------DDNAVVRIDGHV 55
           +L + LA  G  SRR    LIR GRVS+  ++A   + +E          +  V +DG  
Sbjct: 2   RLAQYLALTGRCSRRAASRLIRNGRVSLGDRLAKHTDSIELIETPTGTQASLSVCVDGEP 61

Query: 56  VSVKAQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGL 115
           +   A +        + K  G  C R   E   ++   LP  R  R   VGRLD ++ GL
Sbjct: 62  LPPIADKAY----WIFNKAVGTDC-RLLAEDTTSLIHLLP--RQPRLYPVGRLDKDSRGL 114

Query: 116 LLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAG 175
           LL T DGEL  RLMHPS    + Y VR+     ++ V  +  GV  +D   +   V   G
Sbjct: 115 LLLTNDGELTQRLMHPSFAHHKRYHVRLDRPFDDDFVVKMAAGVSYKDVTTQPCQVTRLG 174

Query: 176 GEGINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQ 235
            +    +F +V+ +G NR++RR+ ++ G  V  LKRV    + L   LP G    L   +
Sbjct: 175 QD----SFEIVLTQGLNRQIRRMSKTLGHKVIDLKRVAIESLTLG-DLPEGEMRPLTQAE 229

Query: 236 VNYL 239
           ++ L
Sbjct: 230 LDEL 233