Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 12/230 (5%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L K ++ +   +R   +  +  G V+V+G+V   G    +++  V +DG  +S+     
Sbjct: 2   RLDKFISESTQLTRSLAKKALHRGEVTVDGQVIKDGSFKLNESQQVCLDGEPISLIGP-- 59

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
              R +  +KP   LC+  D E   +V + L           GRLDA+T+GL+L T+DG+
Sbjct: 60  ---RFIMLHKPADTLCSTVD-EVYPSVLNLLDLPHKEDLHIAGRLDADTTGLVLITSDGQ 115

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQL--EDGMARFEDVMYAGGEGINH 181
            ++R+  P R+  + YLV++   +  E V     G+ L  E+G+ +   +   G    +H
Sbjct: 116 WSHRVTSPKRECGKTYLVQLADPLKAEWVEQFATGLALRSEEGLTKPATLELLG----SH 171

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMEL 231
              + I EG+  +V+R++ + G  V  L R   G+I LD+ L  G W  L
Sbjct: 172 EARLTITEGKYHQVKRMFAAVGNKVVGLHRESVGEIVLDESLAPGEWRYL 221