Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  358 bits (919), Expect = e-104
 Identities = 181/287 (63%), Positives = 225/287 (78%), Gaps = 3/287 (1%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           MSEKLQKVLARAGHGSRRE+EA I AGRVS++G++A LG+R+E D A VRIDG  VS+K+
Sbjct: 6   MSEKLQKVLARAGHGSRREMEAWIAAGRVSIDGEIAKLGDRIEAD-AKVRIDGRTVSIKS 64

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
           +++++CRV+AY+KPEGE+C+R DPEGR TVFDRLPK R SRW++VGRLD NTSGLLLFT+
Sbjct: 65  EDDLVCRVIAYHKPEGEICSRKDPEGRPTVFDRLPKTRDSRWVAVGRLDINTSGLLLFTS 124

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DGELANRLMHPS +VEREY VR FG+VT+  ++ L  GV LEDG A F+ +  AGGEG+N
Sbjct: 125 DGELANRLMHPSHEVEREYAVRTFGEVTDACIQRLRSGVTLEDGPAHFDKIKPAGGEGMN 184

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             ++V + EGRNREVRRLWESQ   VSRL R+RYG I L K LPRGGW+EL ++QVNYLR
Sbjct: 185 KWWHVSLAEGRNREVRRLWESQEVQVSRLIRIRYGMIDLPKSLPRGGWVELPIEQVNYLR 244

Query: 241 ELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATP 287
           +L  +  E  T+L    D  +  R + +S KIRRAVR+H+     TP
Sbjct: 245 KLAGMDEETRTLL--GTDKHSVARAKVKSAKIRRAVRKHKTTAGKTP 289