Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 14/236 (5%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQEE 63
           +L + +++     R+++  ++  GRVSV+G+V    +   D  + V +DG  +    QE+
Sbjct: 7   RLDRFISQHCQIPRKQVRLILAKGRVSVDGQVVRDADCQIDQFSQVMLDGQALR---QEQ 63

Query: 64  VICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGE 123
            I  +L  +KP G +    D E  +TV D LP  +      VGRLD NTSGLLL T D  
Sbjct: 64  PIYLML--HKPVGVVSATKDDE-HKTVMDLLPDYQDKGLHIVGRLDLNTSGLLLLTNDSR 120

Query: 124 LANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGE---GIN 180
            + R+M P  +V ++YLV +   +T+  V+    G         FE++     +      
Sbjct: 121 WSKRIMSPEHKVAKQYLVTLKAPLTQAYVKAFAEGFYF-----AFENITTQPAQLEILEP 175

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQV 236
           H   V ++EGR  +++R++      V  L R+  G++ LD+ L  G +  L  ++V
Sbjct: 176 HLARVTLHEGRYHQIKRMFGRFRNQVMALHRLSVGNLILDETLAVGQYRPLTPQEV 231