Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., pseudouridine synthase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  124 bits (310), Expect = 3e-33
 Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 5/245 (2%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVA-VLGERLEDDNAVVRIDGHVVSVKAQE 62
           +L K +A AG  SRR+ + LI+ G V VNG+V    G R+      + + G ++ + A  
Sbjct: 7   RLNKAIAGAGVCSRRQADDLIQQGVVRVNGEVVDTPGARVVPGRDRIEVRGQLLELDAAP 66

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPK-IRGSRWISVGRLDANTSGLLLFTTD 121
                V+ + KP   + T  DP+GR TV   LP  +RG R   VGRLD  + GLL+ T D
Sbjct: 67  AAFTYVMLH-KPVQVVSTVRDPQGRPTVLGILPPDLRGGRLYPVGRLDYFSEGLLILTDD 125

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFE-DVMYAGGEGIN 180
           G+L NRL HP   + + Y+V+V G VTE  +  + +G+ L +G      DV     +   
Sbjct: 126 GDLTNRLTHPRYHLPKVYMVKVRGHVTESTLAPMRQGMTLAEGEKLAPVDVRLLQSDRQA 185

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             F + +++G NR++RR+    G TV  L+RVR G + L  +LP+G    L   +V  LR
Sbjct: 186 SLFEMTLHQGVNRQIRRMCRDLGLTVLLLRRVRQGPLELG-ELPKGAARRLTPHEVAALR 244

Query: 241 ELVEL 245
               L
Sbjct: 245 RAAGL 249