Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RNA-binding S4 domain protein from Marinobacter adhaerens HP15

 Score =  291 bits (745), Expect = 1e-83
 Identities = 162/319 (50%), Positives = 206/319 (64%), Gaps = 29/319 (9%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           E++QK+LARAG GSRRE+E  + AGR+ VNG+    G++   ++    +DG  + V    
Sbjct: 23  ERIQKLLARAGIGSRREIEGWMEAGRLLVNGQPVAPGQKATVEDRF-ELDGKRLEVSGAA 81

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
           EV+ RVL Y KPEGE+ TR DPEGR TVFDRLP+++  RWIS+GRLD NT+GL+LFTTDG
Sbjct: 82  EVMRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLKEHRWISIGRLDINTTGLVLFTTDG 141

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT 182
           ELANRLMHPS Q++REY VR+FG+V + K+  L++GV LEDGMA+F D+  AGG GIN  
Sbjct: 142 ELANRLMHPSNQIDREYAVRIFGEVDDAKIERLLQGVLLEDGMAKFTDISPAGGSGINRW 201

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLREL 242
           F+V + EGRNREVRRLWESQG  VSRLKRVRYG IFL  +L  G W ELD + V+ L   
Sbjct: 202 FHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGPIFLPSRLTVGKWEELDQRAVDTLSRT 261

Query: 243 VELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKPGGE 302
           V L              A    ++T ++K       H+ +   +PGRSGK    + PG  
Sbjct: 262 VGLE-------------AVEIPQKTPNEK-----AAHDRQRRKSPGRSGK----KTPG-- 297

Query: 303 SSTRNKVANQQQSSRKPRG 321
               NK A       KP G
Sbjct: 298 ----NKWAVSDTKPAKPAG 312