Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Pantoea sp. MT58

 Score =  385 bits (989), Expect = e-112
 Identities = 199/306 (65%), Positives = 239/306 (78%), Gaps = 12/306 (3%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAV-VRIDGHVVSVK 59
           MSEKLQKVLARAGHGSRRE+E++I AGRVSV+GK+A LG+R+E   ++ +RIDGH+VS+ 
Sbjct: 1   MSEKLQKVLARAGHGSRREIESMIAAGRVSVDGKIATLGDRVESSKSLKIRIDGHLVSIA 60

Query: 60  AQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119
                +CRVLAYYKPEGELCTR DPEGR TVFDRLP++RGSRWI+VGRLD NT GL+LFT
Sbjct: 61  ESATEVCRVLAYYKPEGELCTRSDPEGRPTVFDRLPRLRGSRWIAVGRLDVNTCGLMLFT 120

Query: 120 TDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI 179
           TDGELANRLMHPSR+VEREY VRVFG V ++K+R L +GVQLEDG A F+ + + GGEGI
Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDDKIRQLSKGVQLEDGPAAFKTLKFGGGEGI 180

Query: 180 NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           N  + V + EGRNREVRRLWE+ G  VSRL RVRYGDI L K LPRGGW ELDL  VNYL
Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLMRVRYGDITLPKGLPRGGWTELDLPAVNYL 240

Query: 240 RELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATPGRSGKAPARRKP 299
           R LVEL  E  T L +  D     R RT++ +IRRAV+RH  ++S+TP    +AP RR P
Sbjct: 241 RNLVELDDETVTKLVVEKD-----RRRTKANQIRRAVKRH-TKVSSTP----RAP-RRNP 289

Query: 300 GGESST 305
           G + ++
Sbjct: 290 GSKRNS 295