Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., 23S rRNA pseudouridine synthase F from Klebsiella michiganensis M5al

 Score =  115 bits (287), Expect = 2e-30
 Identities = 86/305 (28%), Positives = 161/305 (52%), Gaps = 27/305 (8%)

Query: 2   SEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQ 61
           S +L K ++ +G  SRRE +  I  G V +NGK A +G++++  + VV+++G ++  +  
Sbjct: 6   STRLNKYISESGICSRREADRFIEQGNVFINGKRATIGDQVKAGD-VVKVNGRLIEPREA 64

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTD 121
           ++++  ++A  KP G + T  D E R  + D +      R   +GRLD ++ GL+  T  
Sbjct: 65  DDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRIFPIGRLDKDSQGLIFLTNH 119

Query: 122 GELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINH 181
           G+L N+++      E+EYLV V   +T+E +R +  GV +   + +   V     +    
Sbjct: 120 GDLVNKILRAGNDHEKEYLVTVDKLITDEFIRGMGAGVPILGTVTKKCKVK----KEAPF 175

Query: 182 TFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLRE 241
            F + + +G NR++RR+ E  G  V++L+R R  ++ L   +P G W +L   ++  L +
Sbjct: 176 VFRITLVQGLNRQIRRMCEHFGYEVTKLERTRIMNVSL-TGIPLGEWRDLTDDELIDLFK 234

Query: 242 LVELRPEKETVLNMAPDAATRKRERTRSQKIRR---AVRRHEERISATPGRSGK---APA 295
           L+E         + + +A  + + + ++  I+R   A+ +  E+ S+ P  +GK   AP 
Sbjct: 235 LIE---------SSSSEAKPKAKAKPKTAGIKRPVVAIEKSGEK-SSRPASNGKRFTAPG 284

Query: 296 RRKPG 300
           RRK G
Sbjct: 285 RRKKG 289