Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., ribosomal large subunit pseudouridine synthase B (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  107 bits (268), Expect = 3e-28
 Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 9/248 (3%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAV-LGERLEDDNAVVRIDGHVVSV-KAQ 61
           +L K L+ AG  SRR+ + LI  G+V VNG+V   +G R+      + ++G +++  +A 
Sbjct: 47  RLNKALSGAGVCSRRQADTLIAGGKVRVNGEVVTEMGRRVFPATDRIEVEGRLLACGEAL 106

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPK-IRGSRWISVGRLDANTSGLLLFTT 120
                  +   KP   + T  DP+GR T+ D LP  ++  R   VGRLD  + GLLL T 
Sbjct: 107 NRHRHTYVMLNKPVQVVSTVRDPQGRTTILDILPDDLKTVRLYPVGRLDFFSEGLLLLTD 166

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDG--MARFEDVMYAGGE- 177
           DG+L +RL HP   + + Y V V  D+    +  +  G+ L +G  +A  E  +    E 
Sbjct: 167 DGDLTHRLTHPKWHLPKYYRVLVREDIPPAALTAMRSGMTLAEGDRVAPVEAYIIDRSEY 226

Query: 178 GINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVN 237
           G+     +V+++G NR++RR+    G TV RL R++ G + L   L RG    L+  +V 
Sbjct: 227 GVE--LEMVLHQGINRQIRRMCRDLGLTVLRLLRIQQGPVELG-NLSRGACRRLEDHEVK 283

Query: 238 YLRELVEL 245
            LR+   L
Sbjct: 284 ALRKAAGL 291