Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., RNA-binding S4 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  134 bits (336), Expect = 4e-36
 Identities = 109/312 (34%), Positives = 148/312 (47%), Gaps = 13/312 (4%)

Query: 3   EKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKAQE 62
           +++ KVLARAG  SRRE E LI  GRV+VNGK          +   +  DG  ++    E
Sbjct: 10  DRIAKVLARAGIASRREAERLIAEGRVAVNGKTVDSPALNVTEADKITFDGTPIA----E 65

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
               R+  Y+KP G + T  D +GR TVFD LP     R +SVGRLD N+ GLLL T DG
Sbjct: 66  PEPPRLWRYHKPVGLVTTAKDEKGRETVFDALPADL-PRVMSVGRLDLNSEGLLLLTNDG 124

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT 182
           E+  RL  P+    R Y VRV G  TE+ +  L  G+++E    +  +      +G N  
Sbjct: 125 EIKRRLELPTTGWLRRYRVRVKGAPTEDDLAPLRAGIEVEGERFKPMEARLDRLQGANAW 184

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLREL 242
             + + EGRNRE+RR   + G  V+RL R+ YG   L +  P     E++  +   LRE 
Sbjct: 185 LTLGLREGRNREIRRAMGALGLVVNRLIRISYGPFRLGELKPG----EVEEIKGRILREQ 240

Query: 243 VEL---RPEKETVLNMAPDAATRKRERTRSQK-IRRAVRRHEERISATPGRSGKAPARRK 298
           + L    P   T          RK   T   K   +  R    R  A PG    A    K
Sbjct: 241 LGLESPEPPVGTAQARPKRGPGRKPGATPGGKPTGKPSRAPNARPGAKPGGKPGAKPDPK 300

Query: 299 PGGESSTRNKVA 310
           PG  + +  + A
Sbjct: 301 PGARAGSARRKA 312