Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., ribosomal small subunit pseudouridine synthase A from Caulobacter crescentus NA1000

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 19/232 (8%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHV-----VSV 58
           +L ++LA  G+GSR+E++AL+  G+V ++G +      L+D  A + +D  +     +  
Sbjct: 8   RLDRLLANLGYGSRKEVQALVAGGKVVLDGAI------LKDAGARIAVDATLPERMTIRG 61

Query: 59  KAQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPK---IRGSRWISVGRLDANTSGL 115
              +     VL  +KP G +C+ H  +G + ++D LP+   +R     +VGRLD +TSGL
Sbjct: 62  APVDPPAPLVLIMHKPLGVVCS-HKEDGEK-IYDLLPRRWRLRDPGLSTVGRLDKDTSGL 119

Query: 116 LLFTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAG 175
           +L T DG+  +R++ P R V + YL  +   +   +      G  + D  +  + ++ A 
Sbjct: 120 ILITDDGDFLHRVISPKRHVPKTYLATLDRPLNGSEGEVFAAGTLMLD--SEEKPLLPAR 177

Query: 176 GEGIN-HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRG 226
            + +N H   + I EGR  +VRR++ + G  V  L R R G I L   L  G
Sbjct: 178 LDVVNAHAARLTITEGRYHQVRRMFAAVGNHVVALHRERIGGIALPDDLAAG 229