Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., 16S rRNA pseudouridine516 synthase from Paraburkholderia graminis OAS925

 Score = 89.7 bits (221), Expect = 6e-23
 Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGER---LEDDNAVVRIDGHVVSVKAQ 61
           L+ +L   G GSRR+  ALI   RV++ G V    +     +D +    +DG  V    +
Sbjct: 3   LESILFSQGFGSRRQCRALIADARVAIGGIVCTDPDADFATDDASFSFSVDG--VPWPYR 60

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWIS-VGRLDANTSGLLLFTT 120
           E      L   KP G  C+R DP+   +VF  LP     R +  VGRLD +T+GLLL + 
Sbjct: 61  EHAY---LLLNKPAGYECSR-DPQHHLSVFSLLPPQFAERGVQCVGRLDQDTTGLLLLSD 116

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DG+  +    P R+V + Y+      + + ++  L  GV L  G ++    + A   G  
Sbjct: 117 DGKFVHMFTSPKRKVPKVYVATTRHPIDDRQLSALRDGVMLH-GESKAVAAIDAHARG-E 174

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYL 239
           H+  + + EG+  +V+R+  + G     L R R G + L   L  G W  LD  ++  L
Sbjct: 175 HSLALTVMEGKYHQVKRMIAAAGNRCEALHRERVGGLALPATLAPGAWQWLDETELKLL 233