Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., ribosomal large subunit pseudouridine synthase B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  134 bits (338), Expect = 4e-36
 Identities = 91/238 (38%), Positives = 132/238 (55%), Gaps = 9/238 (3%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAV-LGERLEDDNAVVRIDGHVVSVKAQE 62
           +L K LA AG  SRRE +  I AG VSVNG+V   LG +++  + VV+     VS++ + 
Sbjct: 262 RLNKFLANAGVCSRREADEFITAGVVSVNGEVVTELGTKIKRSD-VVKFHDEPVSIERKV 320

Query: 63  EVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDG 122
            V+       KP+  + T  DP+ RRTV D +      R   VGRLD NT+G+LL T DG
Sbjct: 321 YVLLN-----KPKDTVTTSDDPQERRTVMDLVKGACNERIYPVGRLDRNTTGVLLLTNDG 375

Query: 123 ELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGINHT 182
           +LA++L HP    ++ Y V +  ++T+  +  +  GVQLEDG    + + Y   +     
Sbjct: 376 DLASKLTHPKFLKKKIYHVHLDKNLTKADMDQIAAGVQLEDGEIHADAISYT-DDFKKDQ 434

Query: 183 FYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             + I+ G+NR VRR++ES G  V +L RV +  +   K L RG W  L   +VNYLR
Sbjct: 435 VGIEIHSGKNRIVRRIFESLGYKVVKLDRVFFAGL-TKKGLRRGDWRYLSEAEVNYLR 491