Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase from Burkholderia phytofirmans PsJN

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 12/240 (5%)

Query: 5   LQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGER---LEDDNAVVRIDGHVVSVKAQ 61
           L+ +L   G GSRR+  ALI   RVS+ G      +      D      +DG  V    +
Sbjct: 3   LESILFTQGFGSRRQCRALIADARVSIGGVACTDADADFPTGDTAFFFSVDG--VDWPYR 60

Query: 62  EEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWIS-VGRLDANTSGLLLFTT 120
           E      L   KP G  C+R DP+   +VF  LP     R +  VGRLD +T+GLLL + 
Sbjct: 61  EHAY---LLLNKPAGYECSR-DPQHHLSVFSLLPPQFAERGVQCVGRLDQDTTGLLLLSD 116

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DG+  +    P R+V + Y+      + + ++  L  GV L  G  +    + A   G N
Sbjct: 117 DGKFVHLFTSPKRKVPKVYIATTRHPLDDAQLSALRDGVLLH-GEPKPIAAVDAAARGAN 175

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
            T  + + EG+  +V+R+  + G     L R R G + L + L  G W  LD   +  LR
Sbjct: 176 -TLALTVMEGKYHQVKRMIAAAGNRCEALHRERIGGLALPETLAPGAWQWLDETDLGSLR 234