Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., ribosomal large subunit pseudouridine synthase E (RefSeq) from Shewanella sp. ANA-3

 Score = 77.8 bits (190), Expect = 3e-19
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 17/167 (10%)

Query: 68  VLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTTDGELANR 127
           ++ + KP   LC   D +GR+T+ D +P I G    + GRLD ++ GLLL T DG+L  +
Sbjct: 90  IVLFNKPFDVLCQFTDEQGRKTLKDYIP-IPGV--YAAGRLDRDSEGLLLLTNDGQLQAK 146

Query: 128 LMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGI-------- 179
           L  P ++  + Y V+V G+ T+  +  L +GV+L+DG+     V       +        
Sbjct: 147 LTEPKKKTFKTYWVQVEGEPTDADLAKLRQGVELKDGITLPAKVSIMATPNVWPRNPPIR 206

Query: 180 ------NHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLD 220
                      + I+EGRNR+VRR+    G    RL R + G   LD
Sbjct: 207 ERKNIPTTWLEIQIHEGRNRQVRRMTAHIGFPTLRLIRYKIGQWSLD 253