Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., ribosomal large subunit pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score =  370 bits (949), Expect = e-107
 Identities = 190/287 (66%), Positives = 230/287 (80%), Gaps = 5/287 (1%)

Query: 1   MSEKLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVVSVKA 60
           MSEKLQKVLARAGHGSRRE+EA I AGRVS++G +A LG+R+E D A VRIDG  VS+K+
Sbjct: 1   MSEKLQKVLARAGHGSRREMEAWIAAGRVSIDGVIANLGDRIEAD-AKVRIDGRAVSLKS 59

Query: 61  QEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFTT 120
            ++VICRVLAY+KPEGE+C+R DPEGR TVFDRLPK+R SRW++VGRLD NTSGLLLFT+
Sbjct: 60  ADDVICRVLAYHKPEGEICSRKDPEGRPTVFDRLPKVRDSRWVAVGRLDINTSGLLLFTS 119

Query: 121 DGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGEGIN 180
           DGELANRLMHPS +VEREY VR FG+V E  V+ L  GV LEDGMA+F+ +  AGGEG+N
Sbjct: 120 DGELANRLMHPSNEVEREYAVRTFGEVPEAAVQRLRTGVMLEDGMAQFDAIKAAGGEGMN 179

Query: 181 HTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVNYLR 240
             ++V + EGRNREVRRLWESQ   VSRL RVRYG + L K LPRGGW+EL ++QVNYLR
Sbjct: 180 QWWHVCLREGRNREVRRLWESQEVQVSRLIRVRYGMVELPKSLPRGGWVELPIEQVNYLR 239

Query: 241 ELVELRPEKETVLNMAPDAATRKRERTRSQKIRRAVRRHEERISATP 287
           +L  L PE  T+L  A D  +  R + +S KIRRAVR+H  +++ATP
Sbjct: 240 QLAGLEPETRTML--AADKHSVARAQVKSAKIRRAVRKH--KVTATP 282