Pairwise Alignments

Query, 321 a.a., 23S rRNA pseudouridylate synthase B from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella sp. ANA-3

 Score = 86.3 bits (212), Expect = 7e-22
 Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 19/246 (7%)

Query: 4   KLQKVLARAGHGSRRELEALIRAGRVSVNGKVAVLGERLEDDNAVVRIDGHVV-SVKAQE 62
           +L K LA+ G  SRRE   LI AGR+S+NGK+A   + +  D      DG  + S+   E
Sbjct: 2   RLAKYLAQCGISSRREACRLIEAGRISLNGKIAKHTDAVHFD-----ADGQCLDSLCLDE 56

Query: 63  EVI--CRVLAYY---KPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLL 117
           + I     L+Y+   K  G  C   D + + ++   LP     R   VGRLD ++ GLLL
Sbjct: 57  KPISGAEALSYWIFNKAVGTDCRLLDAD-KSSLLHLLPTT--PRLYPVGRLDKDSRGLLL 113

Query: 118 FTTDGELANRLMHPSRQVEREYLVRVFGDVTEEKVRNLVRGVQLEDGMARFEDVMYAGGE 177
            T DGEL ++LMHPS    + Y V++     +  +  +  GVQ ++       V     +
Sbjct: 114 LTNDGELTHKLMHPSFAHSKTYHVQLDRPFNDAFIAQMASGVQYKEVRTLPCQVTRLSAD 173

Query: 178 GINHTFYVVINEGRNREVRRLWESQGTTVSRLKRVRYGDIFLDKKLPRGGWMELDLKQVN 237
                F +V+ +G NR++RR+  + G  V  L+RV    + L   L  G    L  +++ 
Sbjct: 174 ----RFEIVLTQGLNRQIRRMSNALGYKVIDLQRVALMTLTL-ASLAEGEMRPLSPEEIT 228

Query: 238 YLRELV 243
            L+  V
Sbjct: 229 TLKAAV 234