Pairwise Alignments

Query, 418 a.a., dicarboxylate/amino acid:cation symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., sodium:dicarboxylate symporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  229 bits (584), Expect = 1e-64
 Identities = 142/406 (34%), Positives = 218/406 (53%), Gaps = 17/406 (4%)

Query: 7   KGLLNNIGVQVVIAMLAGTAVGAAMGHDATLFAP--------LGAIFINLIKMLVIPLVA 58
           K L   I + + I +L+GT V   + HD   F+         LG +F+N+I MLV+PLV 
Sbjct: 3   KSLSARIFLGLAIGLLSGTLVQYVL-HDINFFSGTLVEIASGLGTMFVNMIMMLVVPLVF 61

Query: 59  VALISGAAGLGDSHSAGKVGAVTLSYFAITSAAAVALALIMGELFQPGVGVDVSGVESMF 118
           V+++ G   L D  S G++G  T  ++ I +  A+  AL +  L +PG GVD++G     
Sbjct: 62  VSIVCGVCELKDLSSFGRLGGKTFGFYIINTLVAIFAALTVALLLEPGKGVDMTG----- 116

Query: 119 SSEYAAQG-ELPTFWATIIGMIPTNVFQSLNEANILQILVFCLFLGIAISKQAKEKRDPV 177
             E A    ELP+  A ++ ++P N   +    N+LQ++   L LG  + K   E     
Sbjct: 117 GGELAITATELPSLMALVVDIVPRNPVAAFMSGNMLQVIFMALLLG-GVIKSLGEHVTGA 175

Query: 178 INAVNTIVDAMVWMINKVMLIAPIGVFGLMADAVGTFGFSALMVVFKLFVVYVAAIAIFG 237
           ++A  T    M+ +I+ VM +APIGV  LM     T      + V +  V+ +  + ++ 
Sbjct: 176 VSAFQTANKIMMKLISVVMHLAPIGVGALMFKLGATLEAGVFLSVMEYLVLILGLLLLWI 235

Query: 238 FVAYPVMIQLFSKTSAKKFIQAMKKPQAVALSTASSMATLPVTMDTVKNDLGVRNSTASF 297
           FV YP  +QLF+   A  F +  ++    +LSTASS AT+PVTM T+   L V  + A F
Sbjct: 236 FVVYPYAVQLFTPVKASVFREKTQEQILFSLSTASSNATIPVTMRTLTEKLKVNRAVAGF 295

Query: 298 VLPLGATINMSGNAIYYGLVAIFFAQLFNIDLSMGAYIAIIVTATLGAVGQAGVPGPSFL 357
            +PLGAT+NM G +IY  +   F A  F + ++M    A+I +  L +VG  GVPG   +
Sbjct: 296 GVPLGATMNMGGVSIYITVAIFFIANAFGMPITMEQLPALIFSIFLLSVGAGGVPGGGMV 355

Query: 358 VVAVLL-SAGIPIEGLPLLFALDRIFDMIRTALNITGDAACAVIVD 402
           ++ VL+   G+P+E   L+ ALDR+ DM+ T+ N+ GD A   IVD
Sbjct: 356 MIGVLIHQMGLPVEAFALVAALDRLIDMVLTSCNVVGDTAVLTIVD 401