Pairwise Alignments

Query, 418 a.a., dicarboxylate/amino acid:cation symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., sodium:dicarboxylate symporter (RefSeq) from Shewanella loihica PV-4

 Score =  226 bits (576), Expect = 1e-63
 Identities = 142/411 (34%), Positives = 218/411 (53%), Gaps = 36/411 (8%)

Query: 19  IAMLAGTAVGAAMGHDATLFAPLGAIFINLIKMLVIPLVAVALISGAAGLGDSHSAGKVG 78
           +   +GT V  A G        LG +F+N+I M+V+PLV V+++ G   L D  S G++G
Sbjct: 47  VGFFSGTLVEVASG--------LGTMFVNMIMMMVVPLVFVSIVCGVLELDDLKSFGRLG 98

Query: 79  AVTLSYFAITSAAAVALALIMGELFQPGVGVDVSGVESMFSSEYAAQGELPTFWATIIGM 138
             T  ++ I +  A+  AL +  L +PG+GVD++G      +E  A  ELP     I+ +
Sbjct: 99  GKTFGFYIINTLVAIFAALTVALLLKPGLGVDMTGGTG---AEITAT-ELPNLMQLIVNI 154

Query: 139 IPTNVFQSLNEANILQILVFCLFLGIAISKQAKEKRDPVINAVNTIVDA----------- 187
           +P+N   +    N+LQ++   L +G             VI A+N  V             
Sbjct: 155 VPSNPVAAFTSGNMLQVIFMALLVG------------GVIKAMNGAVPLLQQGFMEGNKL 202

Query: 188 MVWMINKVMLIAPIGVFGLMADAVGTFGFSALMVVFKLFVVYVAAIAIFGFVAYPVMIQL 247
           M+ +I  VM +APIGVF LM     T   S  + V +  VV ++ + ++ FV YP  + L
Sbjct: 203 MMKLIGVVMQLAPIGVFALMFKLGATLEASLFLSVVEYLVVILSLLLLWIFVVYPWAVSL 262

Query: 248 FSKTSAKKFIQAMKKPQAVALSTASSMATLPVTMDTVKNDLGVRNSTASFVLPLGATINM 307
           F+  SAK F    ++    +LSTASS AT+PVTM T+   LGV+ + A F +PLGAT+NM
Sbjct: 263 FTPVSAKTFRAKTQEQILFSLSTASSNATIPVTMRTLTEKLGVKRAVAGFGVPLGATMNM 322

Query: 308 SGNAIYYGLVAIFFAQLFNIDLSMGAYIAIIVTATLGAVGQAGVPGPSFLVVAVLL-SAG 366
            G +IY  +   F A  F   ++M    A++ +  L +VG  GVPG   +++ VL+   G
Sbjct: 323 GGVSIYITIAIFFVANSFGAPIAMDQLPALLFSIFLLSVGAGGVPGGGMVMIGVLIHQMG 382

Query: 367 IPIEGLPLLFALDRIFDMIRTALNITGDAACAVIVDSMITEEAAAELEKRE 417
           +P+E   ++ ALDR+ DM+ T+ N+ GDAA   IVD+       A+ E R+
Sbjct: 383 LPVEAFVIVAALDRLIDMVLTSCNVVGDAAVLTIVDATENAHDEAQEEARQ 433