Pairwise Alignments

Query, 591 a.a., aspartate--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Lysyl-tRNA synthetase (class II) from Pseudomonas stutzeri RCH2

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 86/338 (25%), Positives = 145/338 (42%), Gaps = 32/338 (9%)

Query: 2   RSHYCGHLNKSLVGQTVELCGWVNRRRDLGGLI------FIDMRDREGIVQVVVDPDMAD 55
           R  Y G L K    +T E          + G I      F+ ++D  G +QV VD     
Sbjct: 42  RDSYAGDLQKQYAEKTKEELEAAAIPVKVAGRIMLNRGPFMVLQDMSGRIQVYVDRKTLP 101

Query: 56  VFAVANQLRSEFCIKLTGEVRARPESQVNKEMATGEVELLARSLEIINRSDVLPLDFNQK 115
              V      +    +  E       + +  +    V LL +SL        LP  F+  
Sbjct: 102 AEQVEAVKHFDLGDIIAAEGTLARSGKGDLYVYMNSVRLLTKSLR------PLPDKFHGL 155

Query: 116 NSEEQRLKYRYLDLR-RPEMSDRIKLRAKASSFVRRFLDTHGFLDIETPVLTKATPEGAR 174
              EQR + RY+DL    E+ +  ++R++  S +R+FL    FL++ETP+L +  P GA 
Sbjct: 156 TDTEQRYRQRYVDLMVNEEVRETFRVRSQVISHIRKFLAERHFLEVETPML-QTIPGGAA 214

Query: 175 DYLVPSRVHKGSF---YALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQ 231
               P   H  +      L  +P+L+ + L++ GF+R ++I + FR+E +     PEFT 
Sbjct: 215 --AKPFETHHNALDMPMFLRIAPELYLKRLVVGGFERVFEINRNFRNEGVSTRHNPEFTM 272

Query: 232 IDIETSFMTAEQVRAVTEKMIREMWLELLNVDLGDFPIMPYSEAMRRFGSDKPDLRNPME 291
           ++   ++   E    +TE++ R    EL    LG   + PY + +  FG        P  
Sbjct: 273 LEFYQAYADYEDNMDLTEELFR----ELAQAVLGSTDV-PYGDKVFHFG-------EPFA 320

Query: 292 LVDVADLLKDVDFKVFSGPANDPKGRVAALCIPGGAAL 329
            + V D +   + ++ +   ND + +  A+    GA L
Sbjct: 321 RLSVFDSILKYNPEISADDLNDVE-KARAIAKKAGAKL 357



 Score = 57.0 bits (136), Expect = 2e-12
 Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 29/208 (13%)

Query: 372 LTEEIIQAIIERTQAQTGDIIL-FGADSAKVVA-------------------EALGALRL 411
           L  E+ QA++  T    GD +  FG   A++                     E   A+  
Sbjct: 292 LFRELAQAVLGSTDVPYGDKVFHFGEPFARLSVFDSILKYNPEISADDLNDVEKARAIAK 351

Query: 412 KAGKELGITNESAWAPLWVVDFPMFESDDEGNVAAMHHPFTSPLNLSPEQLKANPEEALS 471
           KAG +L + +E     L  +   +FE   E  +   H     P  +SP   + +    ++
Sbjct: 352 KAGAKL-LGHEG----LGKLQVMIFEELVEHKLEQPHFITEYPFEVSPLARRNDRNPNVT 406

Query: 472 NAYDMVLNGYEVGGGSVRIHNAEMQSAVFDILGITPE---EQRLKFGF-LLDALKFGTPP 527
           + +++ + G E+      +++AE Q+  F       +   ++ + F    + AL++G PP
Sbjct: 407 DRFELFIGGREIANAYSELNDAEDQAERFHAQVADKDAGDDEAMHFDADFVRALEYGMPP 466

Query: 528 HAGLAFGLDRLVMLLCGTENIRDVIAFP 555
            AG   G+DRLVMLL  + +IRDVI FP
Sbjct: 467 TAGEGIGIDRLVMLLTNSPSIRDVILFP 494