Pairwise Alignments

Query, 591 a.a., aspartate--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., lysyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 25/289 (8%)

Query: 2   RSHYCGHLNKSLVGQTVELCGWVNRRRDLGGLI------FIDMRDREGIVQVVVDPDM-A 54
           R+H    L +     T E    +  R  + G I      F+ ++D  G +Q   +  + A
Sbjct: 37  RTHKAAELQEKYGQNTKEELEALGFRTSIAGRIMAKRGPFLVIQDVSGRIQAYAEKGVQA 96

Query: 55  DVFAVANQLRSEFCIKLTGEVRARPESQVNKEMATGEVELLARSLEIINRSDVLPLDFNQ 114
           D+      L     I +TG++    +  +   M   E +LL ++L        LP  F+ 
Sbjct: 97  DLKDRYQGLDIGDIIGVTGQLHLSGKGDLYVNME--EYQLLTKALR------PLPEKFHG 148

Query: 115 KNSEEQRLKYRYLDLRRPEMSDR-IKLRAKASSFVRRFLDTHGFLDIETPVLTKATPEGA 173
              +E R + RY+DL   E S +   +R+K  + +R F+    F+++ETP++    P GA
Sbjct: 149 LTDQETRYRQRYVDLIVNEESRQAFVMRSKVVAAIRNFMIKKEFMEVETPMM-HVIPGGA 207

Query: 174 --RDYLVPSRVHKGSFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQ 231
             R ++          Y L  +P+L+ + L++ GF+R ++I + FR+E L     PEFT 
Sbjct: 208 SARPFITHHNALDMPMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEGLSPRHNPEFTM 266

Query: 232 IDIETSFMTAEQVRAVTEKMIREMWLELLNVDLGDFPIMPYSEAMRRFG 280
           ++   ++   + +  +TE+++  + +ELL         MPY E    FG
Sbjct: 267 MEFYMAYADYQDLMDLTEELLSSIAIELLG-----SAQMPYGEHTVDFG 310



 Score = 58.5 bits (140), Expect = 6e-13
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 454 PLNLSPEQLKANPEEALSNAYDMVLNGYEVGGGSVRIHNAEMQSAVF----DILGITPEE 509
           P ++SP   + +    +++ ++  + G EV  G   +++A+ Q + F    D      +E
Sbjct: 389 PADISPLARRNDDNHFITDRFEFFIGGREVANGFSELNDAQDQDSRFKAQVDAKDAGDDE 448

Query: 510 QRLKFGFLLDALKFGTPPHAGLAFGLDRLVMLLCGTENIRDVIAFP 555
                   + AL+ G PP AG   G+DRLVML   T  IRDVI FP
Sbjct: 449 AMFYDADYITALEHGLPPTAGQGIGIDRLVMLFTNTHTIRDVILFP 494