Pairwise Alignments

Query, 591 a.a., aspartate--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data) from Caulobacter crescentus NA1000

 Score =  407 bits (1046), Expect = e-118
 Identities = 244/604 (40%), Positives = 349/604 (57%), Gaps = 31/604 (5%)

Query: 2   RSHYCGHLNKSLVGQTVELCGWVNRRRDLGGLIFIDMRDREGIVQVVVDPDMADVFAVAN 61
           R+H CG L  S  G  V L GW++R+RD GGL+FID+RD  G+ Q+V+ P+    F V  
Sbjct: 8   RTHNCGALRASDTGAAVRLSGWIHRKRDHGGLVFIDLRDHYGLTQLVLHPETPG-FNVVE 66

Query: 62  QLRSEFCIKLTGEVRARPESQVNKEMATGEVELLARSLEIINRSDVLPLD-FNQKN-SEE 119
           +LR+E  I++ GEV AR  S VN  + TGE+E+   ++E+++ +  LPL  F + +  EE
Sbjct: 67  RLRAESVIRVDGEVIARDASVVNPNLPTGEIEIRVSAVEVLSEAAELPLPVFGEPDYPEE 126

Query: 120 QRLKYRYLDLRRPEMSDRIKLRAKASSFVRRFLDTHGFLDIETPVLTKATPEGARDYLVP 179
            RLK+RYLDLRR  +   I LR++    +R  +   GF + +TP+LT ++PEGARD+LVP
Sbjct: 127 IRLKHRYLDLRRETLHKNIVLRSRVIQSIRNRMFAQGFNEFQTPILTASSPEGARDFLVP 186

Query: 180 SRVHKGSFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDIETSFM 239
           SR+H   FYALPQ+PQ FKQLLM+SGFDRY+QI  CFRDEDLRADR  EF Q+D+E SF+
Sbjct: 187 SRLHPEKFYALPQAPQQFKQLLMVSGFDRYFQIAPCFRDEDLRADRSLEFYQLDVEMSFV 246

Query: 240 TAEQVRAVTEKMIREMWLELLN--------------VDLGD------FPIMPYSEAMRRF 279
           T E V A  E ++  ++ E  N               D G       F  + Y+++M  +
Sbjct: 247 TQEDVFAAIEPVMHGVFEEFSNGKPVSPINGTHTFTNDFGQSFEHKGFERLTYAQSMAWY 306

Query: 280 GSDKPDLRNPMELVDVADLLKDVDFKVFSGPAN-DPKGRVAALCIPGGAALTRKQIDEYT 338
           GSDKPDLRNP+++ +V++  +D  F +F+     D K +V A+  P G   +R   D   
Sbjct: 307 GSDKPDLRNPIKMANVSEHFRDGGFGLFAKILGADAKNQVWAIPAPTGG--SRAFCDRMN 364

Query: 339 AFVAIYGAKGLAWLKVNDLAAGMEGIQSPVAKFLTEEIIQAIIERTQAQTGDIILFGADS 398
           ++    G  GL ++  ++   G  G   P+AK L E   QA++E      GD   F A  
Sbjct: 365 SWAQGEGQPGLGYVFWSEDQGGWGG---PIAKNLGEP-TQALMESLGLGAGDAAFFVAGD 420

Query: 399 AKVVAEALGALRLKAGKELGITNESAWAPLWVVDFPMFE-SDDEGNVAAMHHPFTSPLNL 457
             V A+  G  R + G EL + +E+ +   W+VDFPMFE +++E  V   H+PF+ P   
Sbjct: 421 PAVFAKFAGLARTRVGTELKLVDENQFKFCWIVDFPMFEWNEEEKKVDFSHNPFSMPQGG 480

Query: 458 SPEQLKANPEEALSNAYDMVLNGYEVGGGSVRIHNAEMQSAVFDILGITPEEQRLKFGFL 517
                  +P    +  YD+V NGYE+  G++R H  E+    F   G  PE    +FG +
Sbjct: 481 LEALETQDPLTIRAYQYDIVCNGYELCSGAIRNHKPEIMLKAFATAGYGPEVVEEQFGGM 540

Query: 518 LDALKFGTPPHAGLAFGLDRLVMLLCGTENIRDVIAFPKTTAAACLMTDAPSLANPAALE 577
           L+A ++G PPH GLA G+DR+VMLL     IR+VIAFP       L+ +AP+      L+
Sbjct: 541 LNAFRYGAPPHGGLAPGIDRIVMLLADQVAIREVIAFPLNQQGQDLLMNAPANVLDKQLK 600

Query: 578 ELAI 581
           EL I
Sbjct: 601 ELHI 604