Pairwise Alignments

Query, 323 a.a., tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., tRNA (5-methoxyuridine) 34 synthase from Pseudomonas fluorescens FW300-N2E2

 Score =  347 bits (889), Expect = e-100
 Identities = 173/323 (53%), Positives = 219/323 (67%), Gaps = 6/323 (1%)

Query: 1   MFNFANVYQQIAQHPQLQLWLNTLPQQLTDWQAKQHGDLDRWMRNLKKIPVGQPEVIDLK 60
           M + + + + +A  P L  W  TL  QL     K HGDL+RW   L  +P  QP  +DL 
Sbjct: 1   MIDLSPLARHLAGTP-LADWAATLQTQLDSKMEKGHGDLERWQSALDALPALQPTTVDLL 59

Query: 61  NAVAAHNHQPLAQGEQKKLEAVLKTFHPWRKGPYHLHGIHIDTEWRSDWKWDRLLPHISP 120
           N +        +   + ++   L    PWRKGP+ L G+H+DTEWRSDWKW R+ PH+  
Sbjct: 60  NGLTLDTD--CSDETRGQMRTALMGLSPWRKGPFDLFGVHVDTEWRSDWKWSRVAPHLD- 116

Query: 121 LKNRLVLDVGCGNGYHMWRMLGEGAQQVFGIDPSELFLIQFEAVRKLLGDDQRVHLLPLG 180
           LK + +LDVGCGNGY+MWRMLG GA  V G+DP+ LF  QF+AV++ L      HL P  
Sbjct: 117 LKGKRILDVGCGNGYYMWRMLGAGADTVIGVDPNWLFFCQFQAVQRYLSQPNAWHL-PFP 175

Query: 181 IEQMP-ELNAFDTVFSMGVLYHRRSPLDHLLQLKNQLVAGGELILETLVVEGDEHTVLVP 239
            E +P EL  FDTVFSMGV YHRRSP++HLL LK+ LV GGEL+LETLV+EGDEH VLVP
Sbjct: 176 FEALPPELEGFDTVFSMGVFYHRRSPIEHLLALKDCLVKGGELVLETLVIEGDEHQVLVP 235

Query: 240 FDRYAQMRNVYFFPSALALKVWLEKTGFVDVRIVDENITSLGEQRTTEWMTHNSLPDYVD 299
            DRYAQMRNV+F PS  AL+ WL + GF DVR VD ++T++ EQR TEWM + SL D++D
Sbjct: 236 EDRYAQMRNVWFLPSVPALERWLRRAGFSDVRCVDVSLTTVEEQRGTEWMKYQSLSDFLD 295

Query: 300 PQDPSKTIEGYPAPRRAILIAKK 322
           P D SKTIEG PAP RA+++A+K
Sbjct: 296 PADHSKTIEGLPAPMRAVIVARK 318