Pairwise Alignments

Query, 323 a.a., tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., methyltransferase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  427 bits (1097), Expect = e-124
 Identities = 200/323 (61%), Positives = 255/323 (78%), Gaps = 2/323 (0%)

Query: 1   MFNFANVYQQIAQHPQLQLWLNTLPQQLTDWQAK-QHGDLDRWMRNLKKIPVGQPEVIDL 59
           M NF++ YQQIA    LQ WL TLP  L  WQ + +HG+L +W + L K+    P+ +DL
Sbjct: 1   MINFSSFYQQIADS-NLQHWLETLPAILGKWQREHKHGNLPKWEKVLNKLHYPSPDSVDL 59

Query: 60  KNAVAAHNHQPLAQGEQKKLEAVLKTFHPWRKGPYHLHGIHIDTEWRSDWKWDRLLPHIS 119
            ++V     + L  GE++KLE +L+ F PWRKGP+H+HGIHIDTEWRSDWKWDR+ PHIS
Sbjct: 60  VDSVTIGTGEQLTPGEKEKLENLLRLFMPWRKGPFHIHGIHIDTEWRSDWKWDRVKPHIS 119

Query: 120 PLKNRLVLDVGCGNGYHMWRMLGEGAQQVFGIDPSELFLIQFEAVRKLLGDDQRVHLLPL 179
           PL+NR VLDVGCG+GYHMWRMLG GA++V GIDPS LFL QFEAV++L G++  VHLLPL
Sbjct: 120 PLQNRTVLDVGCGSGYHMWRMLGAGAKRVVGIDPSPLFLCQFEAVKRLSGENHPVHLLPL 179

Query: 180 GIEQMPELNAFDTVFSMGVLYHRRSPLDHLLQLKNQLVAGGELILETLVVEGDEHTVLVP 239
           GIE++P L+AFDTVFSMGVLYHRRSP+DHLLQL++QL  GGEL+LETLV++GDE+ VLVP
Sbjct: 180 GIEELPPLDAFDTVFSMGVLYHRRSPIDHLLQLRDQLRMGGELVLETLVIDGDENAVLVP 239

Query: 240 FDRYAQMRNVYFFPSALALKVWLEKTGFVDVRIVDENITSLGEQRTTEWMTHNSLPDYVD 299
            DRY +M NV+F PS  AL +WL+K  F D+R VD ++T+L EQR T+WM + SL +Y+D
Sbjct: 240 QDRYGKMNNVWFIPSVAALMLWLKKCDFTDIRCVDTDVTALAEQRRTDWMPNESLVEYLD 299

Query: 300 PQDPSKTIEGYPAPRRAILIAKK 322
           P+D +KT+EGYPAP+RA +IA K
Sbjct: 300 PKDITKTVEGYPAPKRATIIAVK 322