Pairwise Alignments

Query, 311 a.a., HDOD domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 22/212 (10%)

Query: 44  LPPIPDVVLKIQRLCLAESTSISDVADCLIEDPGLSAIVIRVANSVVFNRRNITCTDIVT 103
           L P+PD+V +++++   E +  +D+ D +  +P ++A ++++ANS        T + I  
Sbjct: 140 LLPLPDIVQRVRKVLQDEQSEPTDIVDLIAHEPLITAKLLQLANSAFLGFSRATLS-IEE 198

Query: 104 AVSRLGILRVRDIVTAQAIEQLKYSVNLSKECNRILLKSATISREMGATMLLVTQTFKCV 163
           A+ RLG+  +  I+++ AIEQ             I+ KSA +     A  L +    K  
Sbjct: 199 AIIRLGVDLISAIISSIAIEQ---------SATSIIDKSAQLRINEYAYQLALNAQ-KIA 248

Query: 164 DAKKYQYLELEKALLVGLLADIGIFCLVNEYHLYLQNGNYLD-PTIALKIFQSQCSPISQ 222
           +    Q  + E+  +  L++ IG   + +     L    + D PT  L +       IS 
Sbjct: 249 NTLSLQKSKQEELFIAALMSVIGELIVSSRIWQDLFAAQFADWPTRKLIV------AISA 302

Query: 223 LVLRHWGFDHDFLEVACNTELVTERQEVTYLD 254
            +L  WG+     E  C+  L +   EV+Y D
Sbjct: 303 YLLTLWGYS----EFLCDIILSSVEPEVSYTD 330