Pairwise Alignments

Query, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (602), Expect = 2e-66
 Identities = 157/563 (27%), Positives = 277/563 (49%), Gaps = 24/563 (4%)

Query: 9   LEQNPILLIFVVLAIGLSFGKIRFGSFQLGNSIGVLITSLIMGHLGFSFTPEALTIGFML 68
           L+  P + +F+ LAIG   G   F  F LG     L+ ++++G    + +    +I F++
Sbjct: 8   LQIYPEIAVFLSLAIGYWVGNKTFKGFSLGAVTATLLAAVVIGQFDITLSSNVKSIFFLM 67

Query: 69  FIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAYFGGYYLNLDYGLAAGMMAGA 128
           F++ VG   GP F     +DG    + ++V  + +             D G  AG  AG 
Sbjct: 68  FLFAVGYGIGPQFVQGIAKDGLPQALFAVVACLFSLLFPILCAKIAGYDLGATAGFFAGT 127

Query: 129 LTSTPVLVGAQDALNSGLAAVPRHMDLSL-----ILDNVSVGYAMAYLIGLI-SMIMFAK 182
            T +  +  A DA+         H+DL       +   + V YA+ Y+ G + S I+ A+
Sbjct: 128 QTISASMGLATDAIV--------HLDLPAEESKKMFSVIPVAYAVTYIFGTVGSAIVLAQ 179

Query: 183 LLPKLQKQNLSDSAQQIAQERGLGSQR---KVYLPIIRAYRVGPELINWIDGRNLRELGI 239
           ++PKL + +L  + +    + G  ++    + +   +R+Y++  +  N   G  + E   
Sbjct: 180 IIPKLLRIDLEAACKDYMAKNGGTTENARGEWHTYALRSYKLTEK--NRAVGMTIHEFEA 237

Query: 240 -YRQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHARLDPSFRNGKEVFDRNL 298
            +     ++E +R  G +   D ++ L  GD IA+ G  D+         +  E  D  L
Sbjct: 238 QFPHRKVFVEGLRHEGKVIDTDPNSKLSTGDIIAVGGEYDAFVEFFDHPDSFDETQDSEL 297

Query: 299 LDLRISEEEIVVKSDSIAGKRLSDLN--LSEYGCFLNRVVRAQ--IEMPMDLDIVLAKGD 354
           L+  +   ++ V S  I GK L++L    S +G FL ++ R    IE+P+     L +GD
Sbjct: 298 LNQPVLGVDVYVTSRGINGKTLAELGKTTSSHGIFLRKIKRGPKAIEIPILPQTRLFRGD 357

Query: 355 VLQVSGEKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVTMTFGQVSFSLGNA 414
           +L +SG    V+ +  ++G I       D+  +    ++G L G +    G +  +L  A
Sbjct: 358 ILTLSGLTKDVERVTKQLGVIDQRGNSMDVAFWAFAIVIGALLGSLVFKIGNLPLTLSTA 417

Query: 415 VGLLLSGITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNAGSKMFQHLSEVGV 474
            G+L++G+   ++R+ HPTFG+VP+  +  +  +GL +F+  IG++AG      L E+G 
Sbjct: 418 GGVLIAGLIFSWVRSFHPTFGWVPEPTVWFMNSVGLNVFIAAIGISAGPNFVAGLKELGF 477

Query: 475 QVIGLAFLVSVVPVVFAYLVGAYILKMNRALLFGAIIGARTCAPAMDVVNEYAKSTIPAL 534
            +     + + +P+ FA LVG Y+ K + A+L G   GART   ++ ++NE AKS IP+L
Sbjct: 478 SLFLWGVVATTLPLFFAALVGKYVFKFHPAILLGCCAGARTTTASLGMINEKAKSNIPSL 537

Query: 535 GYAGTYAIANILMTLTGTIFILL 557
           GY  TYA+ N L+T+ G + IL+
Sbjct: 538 GYTITYAVGNTLLTMWGLVLILI 560