Pairwise Alignments

Query, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  246 bits (628), Expect = 2e-69
 Identities = 163/571 (28%), Positives = 286/571 (50%), Gaps = 29/571 (5%)

Query: 5   VVLLLEQNPILLIFVVLAIGLSFGKIRFGSFQLGNSIGVLITSLIMGHLGFSFTPEALTI 64
           ++  L  +P L IF+ L  G   G+ + G F LG    VL+  +++G L  S       +
Sbjct: 4   IINQLRDHPELAIFLTLFAGFWLGRFKIGKFSLGTVTSVLLVGVLVGQLNISVDGPMKAV 63

Query: 65  GFMLFIYCVGIEAGPNFFGIFFRDGKH---YLILSLVVLITATWI-AYFGGYYLNLDYGL 120
            F+LF++ VG + GP FF    +DG     + +L  +V + A WI A   GY++    G 
Sbjct: 64  FFLLFLFAVGYKVGPQFFRGLKKDGLPQVGFAVLMCIVSLIAPWILAKIMGYHV----GE 119

Query: 121 AAGMMAGALTSTPVLVGAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLI-SMIM 179
           AAG++AG+ T + V+  A D +N    +  +    +  ++ + V YA+ Y+ G   S  +
Sbjct: 120 AAGLLAGSQTISAVIGVASDTINQLSISDAQK---ATFINAIPVAYAVTYIFGTAGSAWI 176

Query: 180 FAKLLPKLQK--QNLSDSAQQIAQERGL------GSQRKVYLPIIRAYRVGPELINWIDG 231
            A L PK+    + +    +++  + G       G    +   + RAY++  E      G
Sbjct: 177 LASLGPKMLGGLEKVKADCKELEAKMGTSEADEPGFYTALRPVVFRAYKIDNEWFG--KG 234

Query: 232 RNLRELGIY---RQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHARLDPSFR 288
           + + EL  Y        ++ER+R+ G++     D +LQ GDE+ L G  +     +    
Sbjct: 235 KTVSELENYLVENDKRLFVERVRQKGVIEEVTPDMLLQPGDEVVLSGRREYAIGEEDWI- 293

Query: 289 NGKEVFDRNLLDLRISEEEIVVKSDSIAGKRLSDLNLSEY--GCFLNRVVRAQIEMPMDL 346
            G EV D  LLD       ++V   + AG+++S +   ++  G  +  + RA I +P+  
Sbjct: 294 -GPEVIDAQLLDFPAETLPVMVTHRTFAGEKVSTIRALKFMHGVSIRSIKRAGINVPVLA 352

Query: 347 DIVLAKGDVLQVSGEKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVTMTFGQ 406
             V+  GD+L+++G K +V+  A ++G+I   +   D++      +LG L G + +  G 
Sbjct: 353 QTVIDSGDILELTGTKLEVETAAKQMGYIDRPTNQTDMIFVGLGILLGGLVGALAIHLGG 412

Query: 407 VSFSLGNAVGLLLSGITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNAGSKMF 466
           +  SL  + G L++G+  G+LR+ HPTFG +P+ +L ++ ++GL +F+  +G+ AG    
Sbjct: 413 IPISLSTSGGALIAGLVFGWLRSKHPTFGGIPEPSLWVLNNVGLNMFIAVVGIAAGPSFV 472

Query: 467 QHLSEVGVQVIGLAFLVSVVPVVFAYLVGAYILKMNRALLFGAIIGARTCAPAMDVVNEY 526
               EVG  +  +  L + +P++   L+G Y+ K + AL  G   GART   A+  + + 
Sbjct: 473 TGFKEVGFSLFIVGALATAIPLLSGLLMGRYLFKFHPALTLGCTAGARTTTAALGAIQDA 532

Query: 527 AKSTIPALGYAGTYAIANILMTLTGTIFILL 557
             S  PALGY  TYA+ N L+ + G   +LL
Sbjct: 533 LGSDTPALGYTVTYAVGNTLLIIWGVAIVLL 563