Pairwise Alignments

Query, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  245 bits (625), Expect = 4e-69
 Identities = 162/535 (30%), Positives = 266/535 (49%), Gaps = 27/535 (5%)

Query: 17  IFVVLAIGLSFGKIRFGSFQLGNSIGVLITSLIMGHLGFSFTPEALTIGFMLFIYCVGIE 76
           +F+++A+G   G+I+     L  S  V+  +L+ GH G     E    G +LFI+ +GI+
Sbjct: 13  LFLIVALGFMLGRIKIKGLSLDVS-AVIFIALLFGHFGVIIPKELGNFGLVLFIFTIGIQ 71

Query: 77  AGPNFFGIFFRDGKHYLILSLVVLITATWIAYFGGYYLNLDYGLAAGMMAGALTSTPVLV 136
           AGP FF  F   GK  ++++++++ +A   A    Y  ++D     G++AGALTSTP L 
Sbjct: 72  AGPGFFDSFRSKGKTLILITMLIICSACLTAVGLKYAFDIDTPSVVGLIAGALTSTPGLA 131

Query: 137 GAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLISMIMFAKLLPKLQKQNLSDSA 196
            A D+ +S LA               S+ Y +AY  G+I +I+F KLLPK+ + NL   A
Sbjct: 132 VAIDSTHSPLA---------------SIAYGIAYPFGVIGVILFVKLLPKIMRVNLDQEA 176

Query: 197 QQIAQERGLGSQRKVYLPIIRAYRVGPELINWIDGRNLRELGIYRQTGCYIERIRRHGIL 256
           +++  ER  G   ++   I R           +  R+L ++     TG  I R++    +
Sbjct: 177 RRLEIERR-GQFPELGTCIYRVTNAS------VFNRSLMQINARAMTGAVISRLKHKDEI 229

Query: 257 AHPDGDAILQEGDEIALVGFPDSHARLDPSFRNGKEVFDRNLLDLRISEEEIVVKSDSIA 316
           + P    +L EGD I  VG  +S  +L  S   G+       LD     E +++    + 
Sbjct: 230 SIPTAHTVLHEGDYIQAVGSEESLNQL--SVLIGEREEGELPLDKTQEIESLLLTKKDMI 287

Query: 317 GKRLSDLNLSE-YGCFLNRVVRAQIEMPMDLDIVLAKGDVLQVSGEKSKVKGLADKIGFI 375
            K+L DLNL + +GC + RV R+ I++    D+ L  GD L V GEK  +KG+A  +G  
Sbjct: 288 NKQLGDLNLQKNFGCTVTRVRRSGIDLSPSPDLALKFGDKLMVVGEKEGIKGVARLLGNN 347

Query: 376 SVHSQMADLLAFCSFFILGILFGLVTMTFGQ-VSFSLGNAVGLLLSGITLGFLRANHPTF 434
           +      D        +LG+LFG + ++F   +SFS G   G+L+  + L  +    P  
Sbjct: 348 AKKLSDTDFFPIAMGIVLGVLFGKLNISFSDTLSFSPGLTGGVLMVALVLSAVGKTGPII 407

Query: 435 GYVPQGALNMVKDLGLAIFMVGIGLNAGSKMFQHLSEVGVQVIGLAFLVSVVPVVFAYLV 494
             +   A  +++ LGL +F+  +G +AG  +     E G+ + G+   ++VVP++ A +V
Sbjct: 408 WSMSGPANQLLRQLGLLLFLAEVGTSAGKNLVATFQESGLLMFGVGAAITVVPMLVAVIV 467

Query: 495 GAYILKMNRALLFGAIIGARTCAPAMDVVNEYAKSTIPALGYAGTYAIANILMTL 549
           G  + K+N   L G I G  T  P +   +    S IP++ YA  Y IA + + L
Sbjct: 468 GRLVFKINILDLLGTITGGMTSTPGLAAADSMVDSNIPSVAYATVYPIAMVFLIL 522



 Score = 48.1 bits (113), Expect = 8e-10
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 31/180 (17%)

Query: 21  LAIGLSFGKIRFG-----SFQLGNSIGVLITSLIMGHLG------FSFTPEA----LTIG 65
           + +G+ FGK+        SF  G + GVL+ +L++  +G      +S +  A      +G
Sbjct: 363 IVLGVLFGKLNISFSDTLSFSPGLTGGVLMVALVLSAVGKTGPIIWSMSGPANQLLRQLG 422

Query: 66  FMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAYF-GGYYLNLDYGLAAGM 124
            +LF+  VG  AG N    F   G     +   + +    +A   G     ++     G 
Sbjct: 423 LLLFLAEVGTSAGKNLVATFQESGLLMFGVGAAITVVPMLVAVIVGRLVFKINILDLLGT 482

Query: 125 MAGALTSTPVLVGAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLISMIMFAKLL 184
           + G +TSTP L  A   ++S +                SV YA  Y I ++ +I+F +++
Sbjct: 483 ITGGMTSTPGLAAADSMVDSNIP---------------SVAYATVYPIAMVFLILFIQVI 527