Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., ClpB protein from Pseudomonas fluorescens FW300-N2E2

 Score =  293 bits (749), Expect = 3e-83
 Identities = 176/417 (42%), Positives = 252/417 (60%), Gaps = 23/417 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDV--LRRELD 59
           L  +L+ +L+ A + A    H  +   HL+ A+LE        L  Q   DV  LR+EL 
Sbjct: 6   LTSKLQLALSDAQSLAVGLDHPGIEPAHLMQAMLEQQGGSIKPLLMQVGFDVNSLRKELA 65

Query: 60  TFIDQTTPLIPK-NDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQES 118
             +DQ    +PK  + T +   +    R+L +A    Q  G   ++   VL+A   E  S
Sbjct: 66  KELDQ----LPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDEN-S 120

Query: 119 HAAYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATN 178
               LL    +S+            KA  ++ ++       +D + E S  + L+ +  +
Sbjct: 121 KLGKLLLGQGVSK------------KALENAINNLRGGEAVNDANHEESR-QALDKYTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A++G++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAIAEGLA RI+ G 
Sbjct: 168 LTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEK-EKDAILFIDEIHTIIGAG 297
           VP+ ++   + SLD+G+L+AG KYRG+FE+R K++L +L K E   ILFIDE+HT++GAG
Sbjct: 228 VPDGLKGKRLLSLDMGALIAGAKYRGEFEERLKALLNELSKQEGQIILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
               G +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS +DT
Sbjct: 288 KGE-GSMDAGNMLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVEEPSEEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARL 414
             IL GLK +YE HH V  T+ A+ AA +LS +YI +R LPDKAID+IDEA +R R+
Sbjct: 347 IAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRM 403



 Score =  259 bits (662), Expect = 4e-73
 Identities = 139/350 (39%), Positives = 220/350 (62%), Gaps = 9/350 (2%)

Query: 399 DKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQK 458
           ++++ ++D+ G     +  S+    V   EI  +V+K   IP   +   ++D L  ++  
Sbjct: 510 ERSLQMVDQHGKSENQLLRSK----VTEEEIAEVVSKWTGIPVSKMLEGERDKLLKMESL 565

Query: 459 MKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLL--- 515
           +   V GQ+ A+  ++ A++ +RAGL   ++P GSF+F GPTGVGKTE+   L++ L   
Sbjct: 566 LHQRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDT 625

Query: 516 GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPD 575
              ++R DMSE+ E+HSV+RLIGAPPGYVGY++GG LT+AV + P+SV+LLDE+EKAHPD
Sbjct: 626 EEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPD 685

Query: 576 IFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHDAMSEI 635
           +FN+LLQV+++G LTD++GR  DFRN ++VMT+N G  + +++ +G  ++      M  I
Sbjct: 686 VFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSTQ-IQELVG-DREAQRAAVMDAI 743

Query: 636 KKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAV 695
              F PEF NR+D ++ F  L    I  + +  +  L+++L  R + L++S++A   L  
Sbjct: 744 STHFRPEFINRVDEVVIFEPLARDQIAGITEIQLGRLRSRLTERELKLQLSDEALDKLIA 803

Query: 696 KGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAF 745
            GYD   GARP+ R IQ  ++ PLA  +L G  + G TV  T+ +D + F
Sbjct: 804 VGYDPVYGARPLKRAIQRWIENPLAQLILSGRFMPGETVTGTVENDEIVF 853