Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., ATP-dependent chaperone ClpB from Pseudomonas stutzeri RCH2

 Score =  285 bits (729), Expect = 7e-81
 Identities = 177/461 (38%), Positives = 264/461 (57%), Gaps = 35/461 (7%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAA--REALLACQADIDVLRRELD 59
           L  +L+ +L+ A + A    H  +   HL+ ALLE      +  L+    DI  LR+ L 
Sbjct: 6   LTSKLQLALSDAQSIAVGLDHPAIEPLHLMQALLEQQGGSIKPLLMQVGFDIAALRQALT 65

Query: 60  TFIDQTTPLIPKNDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESH 119
             +DQ   L    + T +   +    R+L +A    Q  G   ++   VL+A   +  + 
Sbjct: 66  KELDQLPKL---QNPTGDMNLSQDLARLLNQADRLAQQKGDQYISSELVLLAAL-DSNTR 121

Query: 120 AAYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATNL 179
              LL    +S+  + N I++              D+    +  E   A   L+ +  ++
Sbjct: 122 LGKLLLAQGVSKKALENAINNL----------RGGDAVNDPNAEESRQA---LDKYTVDM 168

Query: 180 NQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNV 239
            + A+ G++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G V
Sbjct: 169 TKRAEDGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEV 228

Query: 240 PEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEKD-AILFIDEIHTIIGAGA 298
           P+ ++   + +LD+GSL+AG K+RG+FE+R K++L  L K++   ILFIDE+HT++GAG 
Sbjct: 229 PDGLKDKRLLALDMGSLIAGAKFRGEFEERLKAVLNDLSKQEGRVILFIDELHTMVGAGK 288

Query: 299 ASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTT 358
           A G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS +DT 
Sbjct: 289 AEGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTI 347

Query: 359 KILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPAS 418
            IL GLK +YE HH V  T+ A+ AA +LS +YI +R LPDKAID+IDEA +R R+    
Sbjct: 348 AILRGLKERYEVHHGVTITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRM---- 403

Query: 419 RRKKTVGVAEIESMVAKMARIPEKSVS-SSDKDILKNLDQK 458
                    EI+S   ++ R+  + +    +++ LK  D +
Sbjct: 404 ---------EIDSKPEELDRLDRRLIQLKIEREALKKEDDE 435



 Score =  262 bits (669), Expect = 6e-74
 Identities = 138/351 (39%), Positives = 222/351 (63%), Gaps = 9/351 (2%)

Query: 399 DKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQK 458
           +++++++D+ G +   +  ++    V   EI  +V+K   IP   +   ++D L  ++  
Sbjct: 510 ERSLEMVDQHGKKENQLLRNK----VTDEEIAEVVSKWTGIPVSKMLEGERDKLLRMEDM 565

Query: 459 MKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLL--- 515
           +   V GQ  A+  ++ A++ +RAGL   ++P GSFLF GPTGVGKTE+   L++ L   
Sbjct: 566 LHTRVIGQHEAVVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDT 625

Query: 516 GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPD 575
              ++R DMSE+ E+HSV+RLIGAPPGYVGY++GG LT+AV + P+SVVL+DE+EKAHPD
Sbjct: 626 EEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLMDEVEKAHPD 685

Query: 576 IFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHDAMSEI 635
           +FN+LLQV+++G LTD++GR  DF+N ++VMT+N G  + +++ +G      +   M  +
Sbjct: 686 VFNVLLQVLEDGRLTDSHGRTVDFKNTVIVMTSNLGSTQ-IQELVGDPGAQRA-AVMDAV 743

Query: 636 KKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAV 695
              F PEF NR+D ++ F+ L    I  + D  +  L+ +L  R +SLE+S++A   L  
Sbjct: 744 AHHFRPEFINRIDEVVVFDPLGREQIAGIADIQLGRLRKRLAERELSLELSQEAMDKLIA 803

Query: 696 KGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAFE 746
            GYD   GARP+ R IQ  ++ PLA ++L G    G +VK  +  +++ F+
Sbjct: 804 VGYDPVYGARPLKRAIQRWIENPLAQQILSGQFAPGSSVKARVEGEQIVFD 854