Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 854 a.a., AAA ATPase, central region:Clp, N terminal:Clp, N terminal from Pseudomonas syringae pv. syringae B728a

 Score =  295 bits (756), Expect = 5e-84
 Identities = 172/417 (41%), Positives = 251/417 (60%), Gaps = 23/417 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAA--REALLACQADIDVLRRELD 59
           L  +L+ +L+ + + A    H  +   HL+ ALLE      +  LL    DI+ LR+EL 
Sbjct: 6   LTSKLQLALSDSQSLAVGLDHPAIEPAHLMQALLEQQGGSIKPLLLQVGFDINSLRKELS 65

Query: 60  TFIDQTTPLIPK-NDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQES 118
             +D+    +PK  + T +   +    R+L +A    Q  G   ++   VL+A   E   
Sbjct: 66  AELDR----LPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSK 121

Query: 119 HAAYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATN 178
               LL                G++K +  +  ++    G+ +      + + L+ +  +
Sbjct: 122 LGKLLL--------------GQGVSKKALENAINNLRGEGAVNDPNVEESRQALDKYTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A++G++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAIAEGLA RI+ G 
Sbjct: 168 LTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEK-EKDAILFIDEIHTIIGAG 297
           VP+ ++   + SLD+G+L+AG KYRG+FE+R KS+L +L K E   ILFIDE+HT++GAG
Sbjct: 228 VPDGLRGKRLLSLDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
               G +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EPS +DT
Sbjct: 288 KGE-GSMDAGNMLKPALARGELHCVGATTLNEYRQYIEKDAALERRFQKVLVDEPSEEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARL 414
             IL GLK +YE HH V  T+ A+ AA +LS +YI +R LPDKAID+IDEA +R R+
Sbjct: 347 IAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRM 403



 Score =  254 bits (648), Expect = 2e-71
 Identities = 138/350 (39%), Positives = 218/350 (62%), Gaps = 9/350 (2%)

Query: 399 DKAIDVIDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQK 458
           ++++ ++D+ G     +  S+    V   EI  +V+K   IP   +   ++D L  ++  
Sbjct: 510 ERSLQMVDQHGKPENQLLRSK----VTEEEIAEVVSKWTGIPVSKMLEGERDKLLRMETL 565

Query: 459 MKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLL--- 515
           +   V GQ+ A+  ++ A++ +RAGL   ++P GSF+F GPTGVGKTE+   L++ L   
Sbjct: 566 LHNRVIGQEEAVVAVSNAVRRSRAGLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDT 625

Query: 516 GIELLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPD 575
              ++R DMSE+ E+HSV+RLIGAPPGYVGY++GG LT+AV + P+S++LLDE+EKAH D
Sbjct: 626 EEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSLILLDEVEKAHSD 685

Query: 576 IFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHDAMSEI 635
           +FN+LLQV+++G LTD++GR  DFRN ++VMT+N G A+ +++ +G  ++      M  +
Sbjct: 686 VFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQ-IQELVG-DREAQRAAVMDAV 743

Query: 636 KKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAV 695
              F PEF NR+D ++ F  L    I  + D  +  L+ +L  R +S+ +S +A   L  
Sbjct: 744 GTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELSMTLSPEALDKLIA 803

Query: 696 KGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAF 745
            GYD   GARP+ R IQ  ++ PLA  +L GS + G T+   + DD + F
Sbjct: 804 VGYDPVYGARPLKRAIQRWIENPLAQMILSGSFMPGTTITGKVVDDEITF 853