Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., Chaperone clpB (NCBI) from Rhodospirillum rubrum S1H

 Score =  299 bits (765), Expect = 5e-85
 Identities = 205/562 (36%), Positives = 308/562 (54%), Gaps = 54/562 (9%)

Query: 10  LNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTFIDQTTPLI 69
           L  A   A  + H+ +T EHLL ALL++     A L   A  D LR +    +++    +
Sbjct: 14  LQAAQTIALRETHQQVTPEHLLKALLDDKEGLAANLIRAAGGDPLRAQ--EAVNREVDKL 71

Query: 70  PKNDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLLKKNDI 129
           PK    ++     S  RV+ +A    + +G S VT   +L+A+    E+ A  +L +   
Sbjct: 72  PKVQGAQQMYWAQSLARVIDQATRMAEKAGDSFVTVERLLIALAMAAETPAKRILAEAGA 131

Query: 130 SRLDIVNFISHGITKA-SNHSEDSSSDSFGSSDTSEEVSADERLESFATNLNQLAKQGQI 188
           +          G+ KA  +  +   +DS G+       S  + L+ +A +L + A++G++
Sbjct: 132 T--------PQGLNKAVEDLRKGRKADSAGAE------SQYDALKKYARDLTEAAREGKL 177

Query: 189 DPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPEVIQRSVI 248
           DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G+VPE +Q   +
Sbjct: 178 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIIEGLALRIVNGDVPESLQNKKL 237

Query: 249 YSLDIGSLLAGTKYRGDFEKRFKSILKQLEK-EKDAILFIDEIHTIIGAGAASGGQVDAA 307
            +LD+G+++AG K+RG+FE+R K++L ++   E + ILFIDE+HT+IGAGA  G  +DA+
Sbjct: 238 MALDLGAMVAGAKFRGEFEERLKAMLTEVSAAEGEIILFIDEMHTLIGAGAGEGA-MDAS 296

Query: 308 NLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKILMGLKTK 367
           NL+KP L+ G L C+G+TT  EY    EK+ AL+RRFQ + + EP + DT  IL G+K K
Sbjct: 297 NLLKPALARGDLHCVGATTLNEYRKHVEKDAALARRFQPVFVSEPGVADTISILRGIKEK 356

Query: 368 YEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPASRRKKTVGVA 427
           YE HH VR  + AL AA  LS +YI +R LPDKAID++DEA +R R+   S+ +    + 
Sbjct: 357 YELHHGVRIADNALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMEVDSKPEALDELD 416

Query: 428 E--IESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLG 485
              I+  + + A   EK ++S  +  L +L++++  L    ++    LTE  K  + GL 
Sbjct: 417 RRIIQLKIEREALRKEKDIASEAR--LSDLEKELADL----ESQSATLTEDWKREKEGL- 469

Query: 486 AEHKPVGSFLFAGPTGVGKTEVTLQLSKLLG--------IELLRFDMSEYGERHSVSRLI 537
                            G T +  QL +  G            R    EYG    + R +
Sbjct: 470 ----------------AGSTRIKEQLEQARGDLDIAKRQANWARAGELEYGVIPDLERRL 513

Query: 538 GAPPGYVG--YDQGGLLTDAVI 557
           G      G  + QGG L + V+
Sbjct: 514 GEVESGDGLAHRQGGKLVNEVV 535



 Score =  264 bits (675), Expect = 1e-74
 Identities = 139/325 (42%), Positives = 206/325 (63%), Gaps = 3/325 (0%)

Query: 422 KTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTR 481
           + V    I S+V++   IP   + + +++ L  +++ +   V GQ  A+  ++ A++ +R
Sbjct: 533 EVVTAETIASVVSRWTGIPVDKMLAGEREKLLGMEKVLASRVVGQREAVVAVSNAVRRSR 592

Query: 482 AGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIE---LLRFDMSEYGERHSVSRLIG 538
           AGL   ++P+GSFLF GPTGVGKTE+T  L+  L  +   ++R DMSEY E+H+VSRLIG
Sbjct: 593 AGLQDPNRPMGSFLFLGPTGVGKTELTKALAAFLFDDEQAMVRIDMSEYMEKHAVSRLIG 652

Query: 539 APPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKAD 598
           APPGYVGYD+GG LT+AV + P+ V+L DE+EKAHPD+FN+LLQV+D+G LTD  GR  D
Sbjct: 653 APPGYVGYDEGGALTEAVRRRPYQVILFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVD 712

Query: 599 FRNVILVMTTNAGVAETVKKSIGLIQQDNSHDAMSEIKKVFTPEFRNRLDHIIWFNSLDE 658
           FRN ++V+T+N G      +  G          M  ++  F PEF NRLD I+ F+ L  
Sbjct: 713 FRNTLIVLTSNLGADILANQPEGDDSGAVRGAVMEMVRAAFRPEFLNRLDEILLFHRLFR 772

Query: 659 RVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKP 718
             +  +V   +  L  +L  R ++L++ + AR WLA +GYD   GARP+ RVIQ  L+ P
Sbjct: 773 ENMAGIVSIQLGRLADRLRDRKMTLDLDDAARDWLAERGYDPVYGARPLKRVIQRSLENP 832

Query: 719 LANELLFGSLVDGGTVKVTLSDDRL 743
           LA  +L G + DG  +++T+   +L
Sbjct: 833 LATLVLDGRIKDGDVIRITVEGGKL 857