Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATPase (RefSeq) from Shewanella loihica PV-4

 Score =  286 bits (731), Expect = 4e-81
 Identities = 163/421 (38%), Positives = 249/421 (59%), Gaps = 21/421 (4%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDV--LRRELD 59
           +  + + +++ A + A  + H+F+   HL++ALL  D      L  QA I V  LR  L 
Sbjct: 6   MTNKFQIAISDAQSLALGRDHQFIEPIHLMMALLNQDGGSIHPLLTQAGISVSTLRSALS 65

Query: 60  TFIDQTTPLIPKNDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESH 119
             +++   +     + + +Q  +    +  +    +    + +   + + V    E    
Sbjct: 66  QELERLPQIEGTGGDVQLSQALIRLLNLCDK----LAQKRKDKYISSELFVLAALEGSDA 121

Query: 120 AAYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATNL 179
            A  LKK+  ++ +++      +    N  + ++ D              + L+ F  +L
Sbjct: 122 LAQCLKKSGATK-ELLEKTIEEVRLGKNIDDPNAEDQ------------RQALKKFTVDL 168

Query: 180 NQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNV 239
            + A+QG++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RI+ G V
Sbjct: 169 TERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 228

Query: 240 PEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAGA 298
           PE I+   + SLD+G+L+AG KYRG+FE+R K++L +L +E+   ILFIDE+HT++GAG 
Sbjct: 229 PEGIKNKRVLSLDLGALVAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAGK 288

Query: 299 ASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTT 358
            S G +DA N++KP L+ G L C+G+TT  EY    EK+ AL RRFQK+ + EPS++DT 
Sbjct: 289 -SDGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTI 347

Query: 359 KILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPAS 418
            IL GLK +YE HH V  T+ A+ AA  +S +YI++R LPDKAID+IDEA +  R+   S
Sbjct: 348 AILRGLKERYELHHHVEITDPAIVAAASMSHRYISDRKLPDKAIDLIDEAASSIRMQIDS 407

Query: 419 R 419
           +
Sbjct: 408 K 408



 Score =  280 bits (717), Expect = 2e-79
 Identities = 144/343 (41%), Positives = 221/343 (64%), Gaps = 5/343 (1%)

Query: 407 EAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQ 466
           +  A+A +   +  +  V   EI  +++K   IP   +   +K+ L ++++ +   V GQ
Sbjct: 514 DLAAQAEMQDMTLLRNKVSDVEIAEVLSKATGIPVSKMLEGEKEKLLHMEEALHTRVIGQ 573

Query: 467 DAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLL---GIELLRFD 523
           + A+D +  AI+ +RAGL   ++P+GSFLF GPTGVGKTE+   L+K L      ++R D
Sbjct: 574 NEAVDAVANAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLAKFLFDTEAAMVRID 633

Query: 524 MSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQV 583
           MSE+ E+HSVSRL+GAPPGYVGY++GG LT+AV + P+SV+LLDE+EKAHPD+FN+LLQV
Sbjct: 634 MSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQV 693

Query: 584 MDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQ-QDNSHDAMSEIKKVFTPE 642
           +D+G LTD  GR  DFRN +++MT+N G ++ +++  G+    +   + M+ +   F PE
Sbjct: 694 LDDGRLTDGQGRTVDFRNSVVIMTSNLG-SDVIQERFGIASYAEMKSEVMNVVTHSFRPE 752

Query: 643 FRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREM 702
           F NR+D  + F+ L+   I  +    I  L+A+L  +   LEVS+DA   +A  G+D   
Sbjct: 753 FLNRIDESVVFHPLESEHIAHIAQIQIDNLKARLAEKDFELEVSDDALALIAQAGFDPVY 812

Query: 703 GARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAF 745
           GARP+ R +Q++++ PLA +LL G L+ G  +KV  +   LAF
Sbjct: 813 GARPLKRALQQEVENPLAQKLLSGELLPGAPIKVDAAGGELAF 855