Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) from Mycobacterium tuberculosis H37Rv

 Score =  285 bits (730), Expect = 5e-81
 Identities = 176/472 (37%), Positives = 269/472 (56%), Gaps = 26/472 (5%)

Query: 7   ESSLNGAFARARDKRHEFMTVEHLLLALL-ENDAAREALL-ACQADIDVLRRELDTFIDQ 64
           +++L  A   A    +  +   HLL+ALL +ND     LL A   +   +R E    +D+
Sbjct: 11  QAALTAALQAASTAGNPEIRPAHLLMALLTQNDGIAAPLLEAVGVEPATVRAETQRLLDR 70

Query: 65  TTPLIPKNDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLL 124
               +P+      TQP LS + +             + +T A  L     ++     +++
Sbjct: 71  ----LPQATGA-STQPQLSRESL-------------AAITTAQQLATELDDEYVSTEHVM 112

Query: 125 KKNDISRLDIVNFIS-HGITKASNHSEDSSSDSFGSSDTSEEVSADERLESFATNLNQLA 183
                   D+   ++ HG +  +               + E  +  + L+ ++T+L   A
Sbjct: 113 VGLATGDSDVAKLLTGHGASPQALREAFVKVRGSARVTSPEPEATYQALQKYSTDLTARA 172

Query: 184 KQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPEVI 243
           ++G++DP+IGRD E+ R +QVL RR KNNP+L+GE GVGKTAI EGLA RIV G+VPE +
Sbjct: 173 REGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESL 232

Query: 244 QRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEKDAIL-FIDEIHTIIGAGAASGG 302
           +   I +LD+GS++AG+KYRG+FE+R K++L  ++     I+ FIDE+HTI+GAGA   G
Sbjct: 233 RDKTIVALDLGSMVAGSKYRGEFEERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEG 292

Query: 303 QVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKILM 362
            +DA N+IKP+L+ G+LR +G+TT  EY    EK+ AL RRFQ++ + EPS++DT  IL 
Sbjct: 293 AMDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQQVYVGEPSVEDTIGILR 352

Query: 363 GLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPASRRKK 422
           GLK +YE HH VR T+ AL AA  LS +YI  R LPDKAID++DEA +R R+   SR   
Sbjct: 353 GLKDRYEVHHGVRITDSALVAAATLSDRYITARFLPDKAIDLVDEAASRLRMEIDSR--- 409

Query: 423 TVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLT 474
            V + E+E +V ++  I E ++S  + +       K++  +  Q   +  LT
Sbjct: 410 PVEIDEVERLVRRL-EIEEMALSKEEDEASAERLAKLRSELADQKEKLAELT 460



 Score =  265 bits (677), Expect = 7e-75
 Identities = 161/415 (38%), Positives = 243/415 (58%), Gaps = 35/415 (8%)

Query: 335 EKERALSRRFQK----IDIVEPSLDDTTKILMGLKTKYEAHHDVRYTNKALRAAVELSAK 390
           EK   L+ R+Q     I+IV   L +  + L G   + E   D       L  A EL   
Sbjct: 454 EKLAELTTRWQNEKNAIEIVR-DLKEQLEALRGESERAERDGD-------LAKAAELRYG 505

Query: 391 YINERHLPDKAIDV-IDEAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDK 449
            I E    +K +D  + +A AR ++M     K+ VG  +I  +V+    IP   +   + 
Sbjct: 506 RIPE---VEKKLDAALPQAQAREQVM----LKEEVGPDDIADVVSAWTGIPAGRLLEGET 558

Query: 450 DILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTL 509
             L  ++ ++   V GQ AA+  +++A++ +RAG+   ++P G+F+F GPTGVGKTE+  
Sbjct: 559 AKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGVSDPNRPTGAFMFLGPTGVGKTELAK 618

Query: 510 QLSKLLGIE---LLRFDMSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLL 566
            L+  L  +   ++R DMSEYGE+H+V+RLIGAPPGYVGY+ GG LT+AV + P++VVL 
Sbjct: 619 ALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRRPYTVVLF 678

Query: 567 DEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQD 626
           DEIEKAHPD+F++LLQV+D G LTD +GR  DFRN IL++T+N G               
Sbjct: 679 DEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLG------------SGG 726

Query: 627 NSHDAMSEIKKVFTPEFRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVS 686
           ++   ++ ++  F PEF NRLD ++ F  L+   + ++VD  + +L  +L  R + L+VS
Sbjct: 727 SAEQVLAAVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVS 786

Query: 687 EDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDD 741
             A+ WLA +G+D   GARP+ R++Q+ +   LA  LL G + DG TV V +S D
Sbjct: 787 LPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPD 841