Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., clpB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 7e-81
 Identities = 184/492 (37%), Positives = 275/492 (55%), Gaps = 28/492 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTF 61
           +  + + +++ A + A  + H+F+   HL++ALL  D+     L  QA I V    L + 
Sbjct: 6   MTNKFQLAISDAQSLALGRDHQFIEPLHLMMALLNQDSGSIHPLLTQAGIRV--SALRSL 63

Query: 62  IDQTTPLIPKNDETR-ETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHA 120
           + Q    +P+ + T  + Q +    R+L       Q   + +   + + V    E     
Sbjct: 64  LSQELERLPQVEGTGGDVQLSQGLIRLLNLCDKLAQKR-KDKYISSELFVLAALEGCDAL 122

Query: 121 AYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADER--LESFATN 178
           A  LKK+             G TK     E +     G     +  + D+R  L+ F  +
Sbjct: 123 AQCLKKS-------------GATKEL--MEQTIEQVRGGQKVDDPNAEDQRQALKKFTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A+QG++DP+IGRD E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G 
Sbjct: 168 LTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAG 297
           VPE I+   + SLD+G+L+AG KYRG+FE+R K++L +L +E+   ILFIDE+HT++GAG
Sbjct: 228 VPEGIKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNELAQEEGQVILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
              G  +DA N++KP L+ G L C+G+TT  EY    EK+ AL RRFQK+ + EPS++DT
Sbjct: 288 KGDGA-MDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK +YE HH V  T+ A+ AA  +S +Y+++R LPDKAID+IDEA +  R+   
Sbjct: 347 IAILRGLKERYELHHHVEITDPAIVAAATMSHRYVSDRKLPDKAIDLIDEAASSIRMQMD 406

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAI 477
           S   K   +  +E    ++    +     +D+   + LD   + L    +A    L+E  
Sbjct: 407 S---KPESLDRLERRAIQLKLEEQALAKENDEASRRRLDHLQEEL-RDVEAKASELSEIW 462

Query: 478 KLTRAGL-GAEH 488
           +  +A L G +H
Sbjct: 463 RTEKAALAGTQH 474



 Score =  273 bits (698), Expect = 3e-77
 Identities = 140/344 (40%), Positives = 219/344 (63%), Gaps = 5/344 (1%)

Query: 407 EAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQ 466
           +  ++A +   +  +  V   EI  +++K   IP   +   +++ L  ++  +   V GQ
Sbjct: 514 DLASQAEMQDMTLLRNKVTDLEIAEVLSKATGIPVSKMLEGEREKLLQMEVALHERVIGQ 573

Query: 467 DAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLL---GIELLRFD 523
           + A+D +  AI+ +RAGL   ++P+GSFLF GPTGVGKTE+   L++ L      L+R D
Sbjct: 574 NEAVDAVANAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLARFLFDSESALVRID 633

Query: 524 MSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQV 583
           MSE+ E+H+VSRL+GAPPGYVGY++GG LT+AV + P+SV+LLDE+EKAHPD+FN+LLQV
Sbjct: 634 MSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQV 693

Query: 584 MDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHDA-MSEIKKVFTPE 642
           +D+G LTD  GR  DFRN +++MT+N G ++ +++  G +       A M+ +   F PE
Sbjct: 694 LDDGRLTDGQGRTVDFRNTVIIMTSNLG-SDIIQEGFGHLSYSEMKSAVMNVVTHSFRPE 752

Query: 643 FRNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREM 702
           F NR+D  + F+ LD   I  +    I  L+ +L  +  +LE++++A   +A  G+D   
Sbjct: 753 FLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEIGFDPVY 812

Query: 703 GARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAFE 746
           GARP+ R +Q++++ PLA +LL G L+ G  +KV+  D  L FE
Sbjct: 813 GARPLKRALQQEMENPLAQKLLRGDLLPGKPIKVSCVDGELVFE 856