Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., ATP-dependent chaperone ClpB from Klebsiella michiganensis M5al

 Score =  291 bits (745), Expect = 1e-82
 Identities = 184/487 (37%), Positives = 279/487 (57%), Gaps = 27/487 (5%)

Query: 2   LNKELESSLNGAFARARDKRHEFMTVEHLLLALLENDAAREALLACQADIDVLRRELDTF 61
           L  + + +L  A + A    ++F+   HL+ ALL  +      L   A I+    EL T 
Sbjct: 6   LTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINA--GELRTN 63

Query: 62  IDQTTPLIPKNDETR-ETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHA 120
           I+Q    +P+ + T  + QP+    R+L       Q    + ++    ++A+  E     
Sbjct: 64  IEQALSRLPQVEGTGGDVQPSQDLVRILNLCDKLAQKRKDNFISSELFVLAVL-ESRGTL 122

Query: 121 AYLLKKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADER--LESFATN 178
             LLK             S G T A+     +     G    +++ + D+R  L+ F  +
Sbjct: 123 TDLLK-------------SAGATTAN--VSQAIEQMRGGESVNDQGAEDQRQALKKFTVD 167

Query: 179 LNQLAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGN 238
           L + A+QG++DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G 
Sbjct: 168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227

Query: 239 VPEVIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEKEK-DAILFIDEIHTIIGAG 297
           VPE ++   + +LD+G+L+AG KYRG+FE+R K +L  L K++ + ILFIDE+HT++GAG
Sbjct: 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 287

Query: 298 AASGGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDT 357
            A G  +DA N++KP L+ G+L C+G+TT  EY    EK+ AL RRFQK+ + EP+++DT
Sbjct: 288 KADGA-MDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPTVEDT 346

Query: 358 TKILMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPA 417
             IL GLK +YE HH V+ T+ A+ AA  LS +YI +R LPDKAID+IDEA +  R+   
Sbjct: 347 IAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQID 406

Query: 418 SRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAI 477
           S+ ++   +  ++  + ++    +     SD+  +K LD   + L   ++    VL E  
Sbjct: 407 SKPEE---LDRLDRRIIQLKLEQQALKKESDEASIKRLDMLNEELA-DKERQYSVLEEEW 462

Query: 478 KLTRAGL 484
           K  +A L
Sbjct: 463 KAEKASL 469



 Score =  278 bits (711), Expect = 9e-79
 Identities = 136/321 (42%), Positives = 216/321 (67%), Gaps = 5/321 (1%)

Query: 427 AEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQDAAIDVLTEAIKLTRAGLGA 486
           AEI  ++A+   IP   +   +++ L  ++Q++   V GQ+ A++ ++ AI+ +RAGL  
Sbjct: 534 AEIAEVLARWTGIPVARMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRAGLSD 593

Query: 487 EHKPVGSFLFAGPTGVGKTEVTLQLSKLL---GIELLRFDMSEYGERHSVSRLIGAPPGY 543
            ++P+GSFLF GPTGVGKTE+   L+  +      ++R DMSE+ E+HSVSRL+GAPPGY
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGY 653

Query: 544 VGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQVMDNGTLTDNNGRKADFRNVI 603
           VGY++GG LT+AV + P+SV+LLDE+EKAHPD+FN+LLQV+D+G LTD  GR  DFRN +
Sbjct: 654 VGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713

Query: 604 LVMTTNAGVAETVKKSIGLIQQDNSHD-AMSEIKKVFTPEFRNRLDHIIWFNSLDERVIH 662
           ++MT+N G ++ +++  G +   +  D  +  + + F PEF NR+D ++ F+ L E+ I 
Sbjct: 714 VIMTSNLG-SDLIQERFGALDYSHMKDLVLGVVSQSFRPEFINRIDEVVVFHPLGEKHIA 772

Query: 663 QVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMGARPMGRVIQEQLKKPLANE 722
            +    +  L  +L+ RG  + +S++A   L+  GYD   GARP+ R IQ+Q++ PLA +
Sbjct: 773 SIAQIQLQRLYKRLEERGYEVHLSDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832

Query: 723 LLFGSLVDGGTVKVTLSDDRL 743
           +L G L+ G  V++ + +DR+
Sbjct: 833 ILSGELIPGKEVQLVVKNDRI 853