Pairwise Alignments

Query, 756 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Vibrio cholerae E7946 ATCC 55056

Subject, 859 a.a., ClpB protein from Caulobacter crescentus NA1000

 Score =  291 bits (745), Expect = 1e-82
 Identities = 182/470 (38%), Positives = 282/470 (60%), Gaps = 33/470 (7%)

Query: 7   ESSLNGAFARARDKRHEFMTVEHLLLALLEN-DAAREALL-ACQADIDVLRRELDTFIDQ 64
           + ++  A + A  + H+    EH+L  LLE  D    AL+ +     D L   ++T + +
Sbjct: 11  KQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRPDQLDGGVETLLAK 70

Query: 65  TTPLIPKNDETRETQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESHAAYLL 124
           T P +         +P  +  RV   A    +++G + VT   +L+AI +++   AA L 
Sbjct: 71  T-PRVDGAGGQLYMKPDTA--RVFAEAEKSAKAAGDAFVTTERLLIAI-AKEGGEAAKLF 126

Query: 125 KKNDISRLDIVNFISHGITKASNHSEDSSSDSFGSSDTSEEVSADERLES---FATNLNQ 181
           K+  +S                  S ++++++     T++  +A+E  E+   +A +L  
Sbjct: 127 KEAGVSA----------------QSLETAANAMRKGRTADSANAEEGYEALKRYARDLTA 170

Query: 182 LAKQGQIDPLIGRDKELERTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRIVEGNVPE 241
            A+ G++DP+IGRD+E+ RTIQVL RR KNNP+L+GE GVGKTAI EGLA RIV G+VPE
Sbjct: 171 AARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVNGDVPE 230

Query: 242 VIQRSVIYSLDIGSLLAGTKYRGDFEKRFKSILKQLEK-EKDAILFIDEIHTIIGAGAAS 300
            ++   + SLD+GSL+AG KYRG+FE+R K++L ++   E   ILFIDE+HT++GAG   
Sbjct: 231 SLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLGEVTAAEGSIILFIDEMHTLVGAGKGD 290

Query: 301 GGQVDAANLIKPLLSSGKLRCIGSTTYQEYSNIFEKERALSRRFQKIDIVEPSLDDTTKI 360
           G  +DA+NL+KP L+ G+L C+G+TT  EY    EK+ AL+RRFQ + + EP+++DT  I
Sbjct: 291 GA-MDASNLLKPALARGELHCVGATTLDEYRKHVEKDAALARRFQPVFVSEPTVEDTVSI 349

Query: 361 LMGLKTKYEAHHDVRYTNKALRAAVELSAKYINERHLPDKAIDVIDEAGARARLMPASRR 420
           L GLK KYE HH VR ++ A+ AA  LS +YI +R LPDKAID++DEA +R R+   S+ 
Sbjct: 350 LRGLKEKYEVHHGVRISDSAIVAAATLSNRYIADRFLPDKAIDLVDEASSRVRMQIDSKP 409

Query: 421 KKTVGVAEIESMVAKMARIPE---KSVSSSDKDILKNLDQKMKMLVFGQD 467
           ++   + EI+  + ++    E   K   ++ K  L+NL+ ++  L F  D
Sbjct: 410 EE---LDEIDRRLVQLKIEREALSKETDAASKQRLENLEVEIDDLQFRSD 456



 Score =  283 bits (725), Expect = 2e-80
 Identities = 148/342 (43%), Positives = 219/342 (64%), Gaps = 8/342 (2%)

Query: 407 EAGARARLMPASRRKKTVGVAEIESMVAKMARIPEKSVSSSDKDILKNLDQKMKMLVFGQ 466
           EAG    L P     + V   +I ++V++   +P + +   +++ L  ++ +++  V GQ
Sbjct: 517 EAGDTQALTP-----EVVDAEQIAAVVSRWTGVPVEKMLEGEREKLLKMEDELRGRVVGQ 571

Query: 467 DAAIDVLTEAIKLTRAGLGAEHKPVGSFLFAGPTGVGKTEVTLQLSKLLGIE---LLRFD 523
           D A++ +++A++  RAGL    KP+GSFLF GPTGVGKTE+T  L++ L  +   + R D
Sbjct: 572 DEALEAVSDAVRRARAGLQDPSKPIGSFLFLGPTGVGKTELTKSLAEFLFADEAAITRMD 631

Query: 524 MSEYGERHSVSRLIGAPPGYVGYDQGGLLTDAVIKHPHSVVLLDEIEKAHPDIFNLLLQV 583
           MSEY E+HSVSRLIGAPPGYVGYD+GG LT+A+ + P+ VVL DEIEKAHPD+FN+LLQV
Sbjct: 632 MSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAIRRRPYQVVLFDEIEKAHPDVFNVLLQV 691

Query: 584 MDNGTLTDNNGRKADFRNVILVMTTNAGVAETVKKSIGLIQQDNSHDAMSEIKKVFTPEF 643
           +D+G LTD  GR  DFRN +++MT+N G      +  G   +      M+ ++  F PEF
Sbjct: 692 LDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQEDGEDVEAVRPMVMNTVRGHFRPEF 751

Query: 644 RNRLDHIIWFNSLDERVIHQVVDKFIVELQAQLDARGVSLEVSEDARHWLAVKGYDREMG 703
            NR+D II F  L    +  +V   +  ++  L  R ++L +  +A +WLA KGYD   G
Sbjct: 752 LNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALALDAEALNWLADKGYDPVYG 811

Query: 704 ARPMGRVIQEQLKKPLANELLFGSLVDGGTVKVTLSDDRLAF 745
           ARP+ RVIQ++L  P+A +LL G + DGG + V ++D +L+F
Sbjct: 812 ARPLKRVIQKELVDPIAKKLLAGEIEDGGVIAVGVTDGQLSF 853