Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

 Score = 80.5 bits (197), Expect = 3e-20
 Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 25/182 (13%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYI--PIKD-VYAAGRLDRDSEGLLILTNDGILQA 121
           +  + +KP   +S   D     T+ D++  P KD ++ AGRLD ++ GL+++TNDG    
Sbjct: 61  RYFMLHKPPGCVSATRDPQ-HPTVLDWLDEPDKDDLHIAGRLDFNTTGLMLITNDGSWSR 119

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGV--TLKDGPTLPAKVDIMPEPTLWPRNP 179
           RLTQPQ+K PK Y+V+ E +          HG+    +D  T PA++ +     L P++ 
Sbjct: 120 RLTQPQTKLPKVYYVETEQTITAEYATTFAHGLYFAFEDLTTQPAELTL-----LGPKS- 173

Query: 180 PVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWRE 238
                         ++++EGR  QV+RM  H     LRL R  MG   L  +L+PG +R 
Sbjct: 174 ------------ARLSIVEGRYHQVKRMFGHFDNKVLRLHRERMGPLLLDANLEPGHYRA 221

Query: 239 VT 240
           +T
Sbjct: 222 LT 223